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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGATCTGATTCAAACCACACGATTCCACGACCTTATTTTGGAGCCGCGGTGGCGGTAGCGGTGGCCGGCGATTGTAGCGGCGTAGGAGCAAGAAATGGgtaccactcctctttcctttcactttcgccacaaaaccagagaacacagtgtctaagcttcttcttattgctcgcgctcgtgtttctcgcattttgctgt...

Basic information

species Glycine max
transcript GLYMA02G06180.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298183163|gb|HO028426.1|HO028426
EST:     GTGGCGGTAGCGGTGGCCGGCGATTGTAGCGGCGTAGGAGCAAGAAATGG                         TTTTATGTTGTGAGGAAGATTGTTAAGCTGTGGGAATATGTCATTGAGAAG
genomic: GTGGCGGTAGCGGTGGCCGGCGATTGTAGCGGCGTAGGAGCAAGAAATGGgtaccactcc ... attggagcagTTTTATGTTGTGAGGAAGATTGTTAAGCTGTGGGAATATGTCATTGAGAAG
EST: gi|193468718|gb|FK433202.1|FK433202
EST:     GTGGCGGTAGCGGTGGCCGGCGATTGTAGCGGCGTAGGAGCAAGAAATGG                         TTTTATGTTGTGAGGAAGATTGTTAAGCTGTGGGAATATGTCATTGAGAAG
genomic: GTGGCGGTAGCGGTGGCCGGCGATTGTAGCGGCGTAGGAGCAAGAAATGGgtaccactcc ... attggagcagTTTTATGTTGTGAGGAAGATTGTTAAGCTGTGGGAATATGTCATTGAGAAG
EST: gi|192329295|gb|FK020214.1|FK020214
EST:     GTGGCGGTAGCGGTGGCCGGCGATTGTAGCGGCGTAGGAGCAAGAAATGG                         TTTTATGTTGTGAGGAAGATTGTTAAGCTGTGGGAATATGTCATTGAGAAG
genomic: GTGGCGGTAGCGGTGGCCGGCGATTGTAGCGGCGTAGGAGCAAGAAATGGgtaccactcc ... attggagcagTTTTATGTTGTGAGGAAGATTGTTAAGCTGTGGGAATATGTCATTGAGAAG
EST: gi|209708889|gb|BW673897.1|BW673897
EST:     GTGGCGGTAGCGGTGGCCGGCGATTGTAGCGGCGTAGGAGCAAGAAATGG                         TTTTATGTTGTGAGGAAGATTGTTAAGCTGTGGGAATATGTCATTGAGAAG
genomic: GTGGCGGTAGCGGTGGCCGGCGATTGTAGCGGCGTAGGAGCAAGAAATGGgtaccactcc ... attggagcagTTTTATGTTGTGAGGAAGATTGTTAAGCTGTGGGAATATGTCATTGAGAAG
EST: gi|213617081|gb|DB961561.1|DB961561
EST:     GTGGCGGTAGCGGTGGCCGGCGATTGTAGCGGCGTAGGAGCAAGAAATGG                         TTTTATGTTGTGAGGAAGATTGTTAAGCTGTGGGAATATGTCATTGAGAAG
genomic: GTGGCGGTAGCGGTGGCCGGCGATTGTAGCGGCGTAGGAGCAAGAAATGGgtaccactcc ... attggagcagTTTTATGTTGTGAGGAAGATTGTTAAGCTGTGGGAATATGTCATTGAGAAG
EST: gi|151394230|gb|EV264101.1|EV264101
EST:     GTGGCGGTAGCGGTGGCCGGCGATTGTAGCGGCGTAGGAGCAAGAAATGG                         TTTTATGTTGTGAGGAAGATTGTTAAGCTGTGGGAATATGTCATTGAGAAG
genomic: GTGGCGGTAGCGGTGGCCGGCGATTGTAGCGGCGTAGGAGCAAGAAATGGgtaccactcc ... attggagcagTTTTATGTTGTGAGGAAGATTGTTAAGCTGTGGGAATATGTCATTGAGAAG
EST: gi|213595718|gb|DB972146.1|DB972146
EST:     GTGGCGGTAGCGGTGGCCGGCGATTGTAGCGGCGTAGGAGCAAGAAATGG                         TTTTATGTTGTGAGGAAGATTGTTAAGCTGTGGGAATATGTCATTGAGAAG
genomic: GTGGCGGTAGCGGTGGCCGGCGATTGTAGCGGCGTAGGAGCAAGAAATGGgtaccactcc ... attggagcagTTTTATGTTGTGAGGAAGATTGTTAAGCTGTGGGAATATGTCATTGAGAAG
EST: gi|209696559|gb|BW666909.1|BW666909
EST:     GTGGCGGTAGCGGTGGCCGGCGATTGTAGCGGCGTAGGAGCAAGAAATGG                         TTTTATGTTGTGAGGAAGATTGTTAAGCTGTGGGAATATGTCATTGAGAAG
genomic: GTGGCGGTAGCGGTGGCCGGCGATTGTAGCGGCGTAGGAGCAAGAAATGGgtaccactcc ... attggagcagTTTTATGTTGTGAGGAAGATTGTTAAGCTGTGGGAATATGTCATTGAGAAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTGGATCTGATTCAAACCACACGATTCCACGACCTTATTTTGGAGCCGCGGTGGCGGTAGCGGTGGCCGGCGATTGTAGCGGCGTAGGAGCAAGAAATGGgtaccactcctctttcctttcactttcgccacaaaaccagagaacacagtgtctaagcttcttcttattgctcgcgctcgtgtttctcgcattttgctgt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctctttcc