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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACCAATGGCAGTGGGAGAACGCCACCGCCGGCGCCGCCGCTGGATTCGCCACCGTCGCCGTCATGCATCCCCTCGATGTTGTCCGAACTAGGTTCCAAGgttttctctcgctcttctcatataaaccaacatttcttatttttcacgccttcgaattcttagaagcattatttgattctgcag

Basic information

species Glycine max
transcript GLYMA02G05890.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G05890.1 (Glycine max), 5'ss of exon 1
lower sequence: AT5G66380.1 (Arabidopsis thaliana), 5'ss of exon 1
GACCAATGGCAGTGGGAGAACGCCACCGCCGGCGCCGCCGCTGGATTCGCCACCGTCGCCGTCATGCATCCCCTCGATGTTGTCCGAACTAGGTTCCAAGgttttctctcgctcttctcatataaaccaacatttcttatttttcacgccttcgaattcttagaagcattatttgattctgcag
|     ||||||||||| || |||||||||||||||| |||||||||||||||||| || |  |||||  | || |||||||| || || || ||||||||| |  | |  | || ||    |||  || |  || |  ||||  |    | | || |      | ||  |             
GCGTCGTGGCAGTGGGAAAATGCCACCGCCGGCGCCGTCGCTGGATTCGCCACCGTAGCTGCTATGCACTCTCTTGATGTTGTTCGTACGAGATTCCAAGgtctggtttttcactcctggattaactcatcgattttgcttttaaaaagttgctaacttgattgaacaacag------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22540891|gb|BU090734.1|BU090734
EST:     CACCGTCGCCGTCATGCATCCCCTCGATGTTGTCCGAACTAGGTTCCAAG                         TTAACGATGGTCGAGTCTCTAATTTTCCCAGTTACAAGAACACCGCTCACG
genomic: CACCGTCGCCGTCATGCATCCCCTCGATGTTGTCCGAACTAGGTTCCAAGgttttctctc ... gattctgcagTTAACGATGGTCGAGTCTCTAATTTTCCCAGTTACAAGAACACCGCTCACG