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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTCGCCAAACAAAAAACAAAAAAATGGCTGCCTTCAGCGGTGACGAAACCGCTCCTTTCTTTGGCTTCCTCGGAGCCGCCGCTGCCCTCGTTTTTTCCTgtaactaactaactcatcaaatcaaagagttttttttgtctcatttcccgaaaccgtcgtcgttttatcttaaaccgtgtgtcgtttttgttttttcag

Basic information

species Glycine max
transcript GLYMA02G05630.2
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G05630.2 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os05g01560.1 (Oryza sativa), 5'ss of exon 1
TCTCGCCAAACAAAAAACAAAAAAATGGCTGCCTTCAGCGGTGACGAAACCGCTCCTTTCTTTGGCTTCCTCGGAGCCGCCGCTGCCCTCGTTTTTTCCTgtaactaactaactcatcaaatcaaagagttttttttgtctcatttcccgaaaccgtcgtcgttttatcttaaaccgtgtgtcgtttttgttttttcag
   || | | | |  | ||         |  |||||||||| || || ||||| |||||||| ||||||||||| |||||| | |||||||| || ||||||||    | ||     |   |||      ||| |  |   ||  ||    | | |   |    ||  |  |   ||  ||                  
CGACGGCGAGCGACCACCATGTCCTCCTCCACCTTCAGCGGCGATGAGACCGCCCCTTTCTTCGGCTTCCTCGGCGCCGCCTCCGCCCTCGTATTCTCCTgtaagctcccaatcttccccttca-----ctttctcggggccagatct--gatctgagatgaggttgacacacgacgcatgcaag--------------

upper sequence: GLYMA02G05630.2 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM5G893252_T01 (Zea mays), 5'ss of exon 1
TCTCGCCAAACAAAAAACAAAAAAATGGCTGCCTTCAGCGGTGACGAAACCGCTCCTTTCTTTGGCTTCCTCGGAGCCGCCGCTGCCCTCGTTTTTTCCTgtaactaactaactcatcaaatcaaagagttttttttgtctcatttcccgaaaccgtc--gtcgttttatcttaaaccgtgtgtcgtttttgttttttcag
 | |  | | |   |  ||         |  |||||||||| ||||| || || || ||||| ||||||||||| |||||||| || ||||| || ||||||||  | | | |  |||    |        || | |||||| ||  ||       ||    | |    || | |  |   |  | |       |    ||
CCACCTCCACCTCCACCCATGGCGGCCTCCACCTTCAGCGGCGACGAGACGGCGCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCGCTCGTCTTCTCCTgtaagcacccatcagatctc-cctccctcccttctctgtctctttcaccagccggatccaaccatccattcctcactcccatcacctcggctggtgcctag

upper sequence: GLYMA02G05630.2 (Glycine max), 5'ss of exon 1
lower sequence: AT1G19910.1 (Arabidopsis thaliana), 5'ss of exon 1
---TCTCGCCAAACAAAAAACAAAAAAATGGCTGCCTTCAGCGGTGACGAAACCGCTCCTTTCTTTGGCTTCCTCGGAGCCGCCGCTGCCCTCGTTTTTTCCTgtaactaactaactcatcaaatcaaagagttttttttgtctcattt-cccgaaaccgtcgtcgttttatcttaaaccgtgtgtcgtt---tttgttt---tttcag
   ||||  | | | |  | | |     |  |  | |||||||| || ||||| ||||||||||| || ||||| || || ||||| || |||||||| ||||||| | | || | |  || | ||      | | || | |||  ||| |||  ||  |   | | |  |  |   | |   |    ||   |  | ||   ||||||
AGATCTCAACGA-CGACGAGCCATGGCTT--CAACTTTCAGCGGCGATGAAACTGCTCCTTTCTTCGGATTCCTTGGCGCTGCCGCCGCTCTCGTTTTCTCCTgta-ccatctgatttctccattcccccgatctcttatctctttttttcccagaattgattttgatccaaatctgatctgatccgattcgatcggattatgtttcag

upper sequence: GLYMA02G05630.2 (Glycine max), 5'ss of exon 1
lower sequence: AT1G75630.2 (Arabidopsis thaliana), 5'ss of exon 1
TCTCGCCAAACAAAAAACAAAAAAATGGCT--GCCTTCAGCGGTGACGAAACCGCTCCTTTCTTTGGCTTCCTCGGAGCCGCCGCTGCCCTCGTTTTTTCCTgtaactaactaactcatcaaatcaaagagttttttttgtctcatttcccgaaaccgtcgtcgttttatcttaaaccgtgtgtcgtttttgttttttcag
   |    | |||| | | ||    |   |  |  |||||||| || ||||| || |||||||| || |||||||| ||||||||||| |||||||| ||||||||      |  ||      |     | ||       |   ||  ||| |    ||  | | ||    |  || |      || |||  | |||||||
--ACAGTCATCAAAGAGCCAATGGCTTCTTCAGGTTTCAGCGGCGATGAAACTGCGCCTTTCTTCGGATTCCTCGGCGCCGCCGCTGCGCTCGTTTTCTCCTgtaagatttcagatccctctcttgtcaatttccccgaattgaatcacccaa---tgtttttgattcgattcgaatc------cgatttgatgttttcag

upper sequence: GLYMA02G05630.2 (Glycine max), 5'ss of exon 1
lower sequence: PP1S1_66V6.1 (Physcomitrella patens), 5'ss of exon 1
-TCTCGCCAAACAAAAAACAAAAAAATGGCTGCCTTCAGCGGTGACGAAACCGCTCCTTTCTTTGGCTTCCTCGGAGCCGCCGCTGCCCTCGTTTTTTCCTgtaactaactaactcatcaaatcaaagagttttttttgtctcatttcccga-aaccgtcgtcgttttatcttaaaccgtgtgtcgttt-ttgttttttcag
 |     |   |   |     |     ||| |  ||||  || || ||   |||||||||||| |||||| |||||||||| ||||||||||| || || ||||   ||    | |  |  ||   ||  |    |  |    ||||   ||      |||| || |||  |  |    ||    |  |  |   |  |   
ATTCGATCCGGCGCCATGTCGACCT-CGGCGGTGTTCAATGGGGATGAGGTCGCTCCTTTCTTCGGCTTCATCGGAGCCGCAGCTGCCCTCGTCTTCTCATgtacgcaatgtccgcccctgat-gtagtttagaatcgggtctatttggtgatgggtttcgtggtattagatggatttttggaaggagtgctacgtccttga

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26047197|gb|CA784067.1|CA784067
EST:     CGCTCCTTTCTTTGGCTTCCTCGGAGCCGCCGCTGCCCTCGTTTTTTCCT                         GTATGGGCGCGGCGTACGGCACCGCGAAGAGCGGCGTCGGGGTTGCGTCGA
genomic: CGCTCCTTTCTTTGGCTTCCTCGGAGCCGCCGCTGCCCTCGTTTTTTCCTgtaactaact ... gttttttcagGTATGGGCGCGGCGTACGGCACCGCGAAGAGCGGCGTCGGGGTTGCGTCGA