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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGCTTGCCCGGCGTCGTTCGCACCACCGTCGGCTACGCCGGCGGATCCAAACCCAACCCCGAATATCGAAGCCTCGGTGACCACGCCGAGTCCGTCAAGgttctcaattgaattccttaatttcgttccgaattgataatcaatgttttaagtataagatagattggacttactatcatttaattggtttaaattgtca...

Basic information

species Glycine max
transcript GLYMA02G05550.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G05550.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os06g04650.1 (Oryza sativa), 5'ss of exon 1
CTGCTTGCCCGGCGTCGTTCGCACCACCGTCGGCTACGCCGGCGGATCCAAACCCAACCCCGAATATCGAAGCCTCGGTGACCACGCCGAGTCCGTCAAGgttctcaattgaattccttaatttcgttccgaattgataatcaatgttttaagtataagata-gattggacttactatcatt-taattggtttaaattgtca
 ||| | ||||||||  | |||||| ||||||||||||||||||| |||||  ||  ||| || || || | |||||| ||||||||||||| ||||||||| |      ||    |  |   |  |  |   ||  | ||| ||    | |    | |||| | |  |    |   || |   ||||  |||   | ||  
GTGCCTCCCCGGCGTGATCCGCACCTCCGTCGGCTACGCCGGCGGGTCCAAGGCCCGCCCTGAGTACCGCAACCTCGGCGACCACGCCGAGTGCGTCAAGgtgcggtgcggagactcccacgcttttagctg-ttcttgatcgataccatgaaccaatgatatgttcagttccatggtcgtagcaattcatttccgtagtt-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27424513|gb|CA936033.1|CA936033
EST:     AACCCAACCCCGAATATCGAAGCCTCGGTGACCACGCCGAGTCCGTCAAG                         GTCGAGTATGACCCACAGCTGATTAGCTTTAGGGAACTCCTGGATGTCTTT
genomic: AACCCAACCCCGAATATCGAAGCCTCGGTGACCACGCCGAGTCCGTCAAGgttctcaatt ... tacaatgcagGTCGAGTATGACCCACAGCTGATTAGCTTTAGGGAACTCCTGGATGTCTTT
EST: gi|9820873|gb|BE556383.1|BE556383
EST:     AACCCAACCCCGAATATCGAAGCCTCGGTGACCACGCCGAGTCCGTCAAA                         GTCGAGTATGACCCACAGCTGATTAGCTTTAGGGAACTCCTGGATGTCTTT
genomic: AACCCAACCCCGAATATCGAAGCCTCGGTGACCACGCCGAGTCCGTCAAGgttctcaatt ... tacaatgcagGTCGAGTATGACCCACAGCTGATTAGCTTTAGGGAACTCCTGGATGTCTTT
EST: gi|51336481|gb|CO980347.1|CO980347
EST:     AACCCAACCCCGAATATCGAAGCCTCGGTGACCACGCCGAGTCCGTCAAG                         GTCGAGTATGACCCACAGCTGATTAGCTTTAGGGAACTCCTGGATGTCTTT
genomic: AACCCAACCCCGAATATCGAAGCCTCGGTGACCACGCCGAGTCCGTCAAGgttctcaatt ... tacaatgcagGTCGAGTATGACCCACAGCTGATTAGCTTTAGGGAACTCCTGGATGTCTTT
EST: gi|5677507|gb|AI938637.1|AI938637
EST:     AACCCAACCCCGAATATCGAAGCCTCGGTGACCACGCCGAGTCCGTCAAG                         GTCGAGTATGACCCACAGCTGATTAGCTTTAGGGAACTCCTGGATGTCTTT
genomic: AACCCAACCCCGAATATCGAAGCCTCGGTGACCACGCCGAGTCCGTCAAGgttctcaatt ... tacaatgcagGTCGAGTATGACCCACAGCTGATTAGCTTTAGGGAACTCCTGGATGTCTTT
EST: gi|58017287|gb|CX704029.1|CX704029
EST:     AACCCAACCCCGAATATCGAAGCCTCGGTGACCACGCCGAGTCCGTCAAG                         GTCGAGTATGACCCACAGCTGATTAGCTTTAGGGAACTCCTGGATGTCTTT
genomic: AACCCAACCCCGAATATCGAAGCCTCGGTGACCACGCCGAGTCCGTCAAGgttctcaatt ... tacaatgcagGTCGAGTATGACCCACAGCTGATTAGCTTTAGGGAACTCCTGGATGTCTTT