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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTGCGGTTAGTGCTGCAGTCTCTTTTCCATCCACCAAGTCTACCTCTCTTCCAAGCAGGACCTCCCTCATTGCCCCAGAGAGAGTTGTGTTCAAGAAGgtaatgtttcacaaacatttcattattgttttcttttttttagcacaaactttctcccattagaatttcatctcgatcaccaatgaggtgtaactcagtt...

Basic information

species Glycine max
transcript GLYMA02G05350.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213607151|gb|DB965093.1|DB965093
EST:     TTCCAAGCAGGACCTCCCTCATTGCCCCAGAGAGAGTTGTGTTCAAGAAG                         GCTTCATTGCAAAACAGAGATGTTTCTAGCAGTGGACGGGTAGTTTCCATC
genomic: TTCCAAGCAGGACCTCCCTCATTGCCCCAGAGAGAGTTGTGTTCAAGAAGgtaatgtttc ... tgtctctcagGCTTCATTGCAAAACAGAGATGTTTCTAGCAGTGGACGGGTAGTTTCCATC
EST: gi|209704813|gb|BW673452.1|BW673452
EST:     TTCCAAGCAGGACCTCCCTCATTGCCCCAGAGAGAGTTGTGTTCAAGAAG                         GCTTCATTGCAAAACAGAGATGTTTCTAGCAGTGGACGGGTAGTTTCCATC
genomic: TTCCAAGCAGGACCTCCCTCATTGCCCCAGAGAGAGTTGTGTTCAAGAAGgtaatgtttc ... tgtctctcagGCTTCATTGCAAAACAGAGATGTTTCTAGCAGTGGACGGGTAGTTTCCATC
EST: gi|213603747|gb|DB956284.1|DB956284
EST:     TTCCAAGCAGGACCTCCCTCATTGCCCCAGAGAGAGTTGTGTTCAAGAAG                         GCTTCATTGCAAAACAGAGATGTTTCTAGCAGTGGACGGGTAGTTTCCATC
genomic: TTCCAAGCAGGACCTCCCTCATTGCCCCAGAGAGAGTTGTGTTCAAGAAGgtaatgtttc ... tgtctctcagGCTTCATTGCAAAACAGAGATGTTTCTAGCAGTGGACGGGTAGTTTCCATC
EST: gi|209707451|gb|BW664910.1|BW664910
EST:     TTCCAAGCAGGACCTCCCTCATTGCCCCAGAGAGAGTTGTGTTCAAGAAG                         GCTTCATTGCAAAACAGAGATGTTTCTAGCAGTGGACGGGTAGTTTCCATC
genomic: TTCCAAGCAGGACCTCCCTCATTGCCCCAGAGAGAGTTGTGTTCAAGAAGgtaatgtttc ... tgtctctcagGCTTCATTGCAAAACAGAGATGTTTCTAGCAGTGGACGGGTAGTTTCCATC
EST: gi|213588393|gb|DB967879.1|DB967879
EST:     TTTCAAGCAGGACCTCCCTCATTGCCCCAGAGAGAGTTGTGTTCAAGAAG                         GCTTCATTGCAAAACAGAGATGTTTCTAGCAGTGGACGGGTAGTTTCCATC
genomic: TTCCAAGCAGGACCTCCCTCATTGCCCCAGAGAGAGTTGTGTTCAAGAAGgtaatgtttc ... tgtctctcagGCTTCATTGCAAAACAGAGATGTTTCTAGCAGTGGACGGGTAGTTTCCATC
EST: gi|209717950|gb|BW666143.1|BW666143
EST:     TTCCAAGCAGGACCTCCCTCATTGCCCCAGAGAGAGTTGTGTTCAAGAAG                         GCTTCATTGCGAAACAGAGATGTTTCTAGCAGTGGACGGGTAGTTTCCATC
genomic: TTCCAAGCAGGACCTCCCTCATTGCCCCAGAGAGAGTTGTGTTCAAGAAGgtaatgtttc ... tgtctctcagGCTTCATTGCAAAACAGAGATGTTTCTAGCAGTGGACGGGTAGTTTCCATC
EST: gi|213607657|gb|DB958676.1|DB958676
EST:     TTCCAAGCAGGACCTCCCTCATTGCCCCAGAGAGAGTTGTGTTCAAGAAG                         GCTTCATTGCAAAACAGAGATGTTTCTAGCAGTGGACGGGTAGTTTCCATC
genomic: TTCCAAGCAGGACCTCCCTCATTGCCCCAGAGAGAGTTGTGTTCAAGAAGgtaatgtttc ... tgtctctcagGCTTCATTGCAAAACAGAGATGTTTCTAGCAGTGGACGGGTAGTTTCCATC
EST: gi|120533254|gb|EH261387.1|EH261387
EST:     TTCCAAGCAGGACCTCCCTCATTGCCCCAGAGAGAGTTGTGTTCAAGAAG                         GCTTCATTGCAAAACAGAGATGTTTCTAGCAGTGGACGGGTAGTTTCCATC
genomic: TTCCAAGCAGGACCTCCCTCATTGCCCCAGAGAGAGTTGTGTTCAAGAAGgtaatgtttc ... tgtctctcagGCTTCATTGCAAAACAGAGATGTTTCTAGCAGTGGACGGGTAGTTTCCATC
EST: gi|151401376|gb|EV271190.1|EV271190
EST:     TTCCAAGCAGGACCTCCCTCATTGCCCCAGAGAGAGTTGTGTTTAAGAAG                         GCTTCATTGCAAAACAGAGATGTTCCTAGCAGTGGACGGGTAGTTTCCATC
genomic: TTCCAAGCAGGACCTCCCTCATTGCCCCAGAGAGAGTTGTGTTCAAGAAGgtaatgtttc ... tgtctctcagGCTTCATTGCAAAACAGAGATGTTTCTAGCAGTGGACGGGTAGTTTCCATC
EST: gi|12688950|gb|BG155286.1|BG155286
EST:     TTCCAAGCAGGACCTCCCTCATTGCCCCAGAGAGAGTTGTGTTCAAGAAG                         GCTTCATTGCAAAACAGAGATGTTTCTAGCAGTGGACGGGTAGTTTCCATC
genomic: TTCCAAGCAGGACCTCCCTCATTGCCCCAGAGAGAGTTGTGTTCAAGAAGgtaatgtttc ... tgtctctcagGCTTCATTGCAAAACAGAGATGTTTCTAGCAGTGGACGGGTAGTTTCCATC
EST: gi|209727185|gb|BW655223.1|BW655223
EST:     TTCCAAGCAGGACCTCCCTCATTGCCCCAGAGAGAGTTGT-TTCAAGAAG                         GCTTCATTGCAAAACAGAGATGTTTCTAGCAGTGGACGGGTAGTTTCCATC
genomic: TTCCAAGCAGGACCTCCCTCATTGCCCCAGAGAGAGTTGTGTTCAAGAAGgtaatgtttc ... tgtctctcagGCTTCATTGCAAAACAGAGATGTTTCTAGCAGTGGACGGGTAGTTTCCATC
EST: gi|213618464|gb|DB969406.1|DB969406
EST:     TTCCAAGCAGGACCTCCCTCATTGCCCCAGAGAGAGTTGTGTTCAAGAAG                         GCTTCATTGCAAAACAGAGATGTTTCTAGCAGTGGACGGGTAGTTTCCATC
genomic: TTCCAAGCAGGACCTCCCTCATTGCCCCAGAGAGAGTTGTGTTCAAGAAGgtaatgtttc ... tgtctctcagGCTTCATTGCAAAACAGAGATGTTTCTAGCAGTGGACGGGTAGTTTCCATC
EST: gi|213611912|gb|DB958922.1|DB958922
EST:     TTTCAAGCAGGACCTCCCTCATTGCCCCAGAGAGAGTTGTGTTCAAGAAG                         GCTTCATTGCAAAACAGAGATGTTTCTAGCAGTGGACGGGTAGTTTCCATC
genomic: TTCCAAGCAGGACCTCCCTCATTGCCCCAGAGAGAGTTGTGTTCAAGAAGgtaatgtttc ... tgtctctcagGCTTCATTGCAAAACAGAGATGTTTCTAGCAGTGGACGGGTAGTTTCCATC
EST: gi|151409217|gb|EV279025.1|EV279025
EST:     TTCCAAGCAGGACCTCCCTCATTGCCCCAGAGAGAGTTGTGTTCAAGAAG                         GCTTCATTGCAAAACAGAGATGTTTCTAGCAGTGGACGGGTAGTTTCCATC
genomic: TTCCAAGCAGGACCTCCCTCATTGCCCCAGAGAGAGTTGTGTTCAAGAAGgtaatgtttc ... tgtctctcagGCTTCATTGCAAAACAGAGATGTTTCTAGCAGTGGACGGGTAGTTTCCATC
EST: gi|209709563|gb|BW661890.1|BW661890
EST:     TTCCAAGCAGGACCTCCCTCATTGCCCCAGAGAGAGTTGTGTTCAAGAAG                         GCTTCATTGCAAAACAGAGATGTTTCTAGCAGTGGACGGGTAGTTTCCATC
genomic: TTCCAAGCAGGACCTCCCTCATTGCCCCAGAGAGAGTTGTGTTCAAGAAGgtaatgtttc ... tgtctctcagGCTTCATTGCAAAACAGAGATGTTTCTAGCAGTGGACGGGTAGTTTCCATC
EST: gi|5509655|gb|AI856213.1|AI856213
EST:     TTCCAAGCAGGACCTCCCTCATTGCCCCAGAGAGAGTTGTGTTCAAGAAG                         GCTTCATTGCAAAACAGAGATGTTTCTAGCAGTGGACGGGTAGTTTCCATC
genomic: TTCCAAGCAGGACCTCCCTCATTGCCCCAGAGAGAGTTGTGTTCAAGAAGgtaatgtttc ... tgtctctcagGCTTCATTGCAAAACAGAGATGTTTCTAGCAGTGGACGGGTAGTTTCCATC
EST: gi|192317371|gb|FK007493.1|FK007493
EST:     TTCCAAGCAGGACCTCCCTCATTGCCCCAGAGAGAGTTGTGTTCAAGAAG                         GCTTCATTGCAAAACAGAGATGTTTCTAGCAGTGGACGGGTAGTTTCCATC
genomic: TTCCAAGCAGGACCTCCCTCATTGCCCCAGAGAGAGTTGTGTTCAAGAAGgtaatgtttc ... tgtctctcagGCTTCATTGCAAAACAGAGATGTTTCTAGCAGTGGACGGGTAGTTTCCATC
EST: gi|209726964|gb|BW675366.1|BW675366
EST:     TTCCAAGCAGGACCTCCCTCATTGCCCCAGAGAGAGTTGTGTTCAAGAAG                         GCTTCATTGCAAAACAGAGATGTTTCTAGCAGTGGACGGGTAGTTTCCATC
genomic: TTCCAAGCAGGACCTCCCTCATTGCCCCAGAGAGAGTTGTGTTCAAGAAGgtaatgtttc ... tgtctctcagGCTTCATTGCAAAACAGAGATGTTTCTAGCAGTGGACGGGTAGTTTCCATC
EST: gi|213594233|gb|DB966134.1|DB966134
EST:     TTCCAAGCAGGACCTCCCTCATTGCCCCAGAGAGAGTTGTGTTCAAGAAG                         GCTTCATTGCAAAACAGAGATGTTTCTAGCAGTGGACGGGTAGTTTCCATC
genomic: TTCCAAGCAGGACCTCCCTCATTGCCCCAGAGAGAGTTGTGTTCAAGAAGgtaatgtttc ... tgtctctcagGCTTCATTGCAAAACAGAGATGTTTCTAGCAGTGGACGGGTAGTTTCCATC
EST: gi|213597241|gb|DB962487.1|DB962487
EST:     TTCCAAGCAGGACCTCCCTCATTGCCCCAGAGAGAGTTGTGTTCAAGAAG                         GCTTCATTGCAAAACAGAGATGTTTCTAGCAGTGGACGGGTAGTTTCCATC
genomic: TTCCAAGCAGGACCTCCCTCATTGCCCCAGAGAGAGTTGTGTTCAAGAAGgtaatgtttc ... tgtctctcagGCTTCATTGCAAAACAGAGATGTTTCTAGCAGTGGACGGGTAGTTTCCATC
EST: gi|209709774|gb|BW668256.1|BW668256
EST:     TTCCAAGCAGGACCTCCCTCATTGCCCCAGAGAGAGTTGTGTTCAAGAAG                         GCTTCATTGCAAAACAGAGATGTTTCTAGCAGTGGACGGGTAGTTTCCATC
genomic: TTCCAAGCAGGACCTCCCTCATTGCCCCAGAGAGAGTTGTGTTCAAGAAGgtaatgtttc ... tgtctctcagGCTTCATTGCAAAACAGAGATGTTTCTAGCAGTGGACGGGTAGTTTCCATC
EST: gi|209705754|gb|BW661422.1|BW661422
EST:     TTTCAAGCAGGACCTCCCTCATTGCCCCAGAGAGAGTTGTGTTCAAGAAG                         GCTTCATTGCAAAACAGAGATGTTTCTAGCAGTGGACGGGTAGTTTCCATC
genomic: TTCCAAGCAGGACCTCCCTCATTGCCCCAGAGAGAGTTGTGTTCAAGAAGgtaatgtttc ... tgtctctcagGCTTCATTGCAAAACAGAGATGTTTCTAGCAGTGGACGGGTAGTTTCCATC
EST: gi|209714651|gb|BW671573.1|BW671573
EST:     TTCCAAGCAGGACCTCCCTCATTGCCCCAGAGAGAGTTGTGTTCAAGAAG                         GCTTCATTGCAAAACAGAGATGTTTCTAGCAGTGGACGGGTAGTTTCCATC
genomic: TTCCAAGCAGGACCTCCCTCATTGCCCCAGAGAGAGTTGTGTTCAAGAAGgtaatgtttc ... tgtctctcagGCTTCATTGCAAAACAGAGATGTTTCTAGCAGTGGACGGGTAGTTTCCATC
EST: gi|20812572|gb|BQ297050.1|BQ297050
EST:     GTTGTGTTCAAGAAG                         GCTTCATTGCAAAACAGAGATGTTTCTAGCAGTGGACGGGTAGGTTCCATC
genomic: GTTGTGTTCAAGAAGgtaatgtttc ... tgtctctcagGCTTCATTGCAAAACAGAGATGTTTCTAGCAGTGGACGGGTAGTTTCCATC
EST: gi|213602157|gb|DB962650.1|DB962650
EST:     TTCCAAGCAGGACCTCCCTCATTGCCCCAGAGAGAGTTGTGTTCAAGAAG                         GCTTCATTGCAAAACAGAGATGTTTCTAGCAGTGGACGGGTAGTTTCCATC
genomic: TTCCAAGCAGGACCTCCCTCATTGCCCCAGAGAGAGTTGTGTTCAAGAAGgtaatgtttc ... tgtctctcagGCTTCATTGCAAAACAGAGATGTTTCTAGCAGTGGACGGGTAGTTTCCATC
EST: gi|9258191|gb|BE346338.1|BE346338
EST:     TTCCAAGCAGGACCTCCCTCATTGCCCCAGAGAGAGTTGTGTTCAAGAAG                         GCTTCATTGCAAAACAGAGATGTTTCTAGCAGTGGACGGGTAGTTTCCATC
genomic: TTCCAAGCAGGACCTCCCTCATTGCCCCAGAGAGAGTTGTGTTCAAGAAGgtaatgtttc ... tgtctctcagGCTTCATTGCAAAACAGAGATGTTTCTAGCAGTGGACGGGTAGTTTCCATC
EST: gi|213589019|gb|DB973119.1|DB973119
EST:     TTCCAAGCAGGACCTCCCTCATTGCCCCAGAGAGAGTTGTGTTCAAGAAG                         GCTTCATTGC--AACAGAGATGTTTCTAGCAGTGGACGGGTAGTTTCCATC
genomic: TTCCAAGCAGGACCTCCCTCATTGCCCCAGAGAGAGTTGTGTTCAAGAAGgtaatgtttc ... tgtctctcagGCTTCATTGCAAAACAGAGATGTTTCTAGCAGTGGACGGGTAGTTTCCATC
EST: gi|15288011|gb|BI471902.1|BI471902
EST:     TTCCAAGCAGGACCTCCCTCATTGCCCCAGAGAGAGTTGTGTTCAAGAAG                         GCTTCATTGCAAAACAGAGATGTTTCTAGCAGTGGACGGGTAGTTTCCATC
genomic: TTCCAAGCAGGACCTCCCTCATTGCCCCAGAGAGAGTTGTGTTCAAGAAGgtaatgtttc ... tgtctctcagGCTTCATTGCAAAACAGAGATGTTTCTAGCAGTGGACGGGTAGTTTCCATC
EST: gi|209717071|gb|BW671378.1|BW671378
EST:     TTCCAAGCAGGACCTCCCTCATTGCCCCAGAGAGAGTTGTGTTCAAGAAG                         GCTTCATTGCAAAACAGAGATGTTTCTAGCAGTGGACGGGTAGTTTCCATC
genomic: TTCCAAGCAGGACCTCCCTCATTGCCCCAGAGAGAGTTGTGTTCAAGAAGgtaatgtttc ... tgtctctcagGCTTCATTGCAAAACAGAGATGTTTCTAGCAGTGGACGGGTAGTTTCCATC
EST: gi|192317372|gb|FK007494.1|FK007494
EST:     TTCCAAGCAGGACCTCCCTCATTGCCCCAGAGAGAGTTGTGTTCAAGAAG                         GCTTCATTGCAAAACAGAGATGTTTCTAGCAGTGGACGGGTAGTTTCCATC
genomic: TTCCAAGCAGGACCTCCCTCATTGCCCCAGAGAGAGTTGTGTTCAAGAAGgtaatgtttc ... tgtctctcagGCTTCATTGCAAAACAGAGATGTTTCTAGCAGTGGACGGGTAGTTTCCATC
EST: gi|213618163|gb|DB965320.1|DB965320
EST:     TTTCAAGCAGGACCTCCCTCATTGCCCCAGAGAGAGTTGTGTTCAAGAAG                         GCTTCATTGCAAAACAGAGATGTTTCTAGCAGTGGACGGGTAGTTTCCATC
genomic: TTCCAAGCAGGACCTCCCTCATTGCCCCAGAGAGAGTTGTGTTCAAGAAGgtaatgtttc ... tgtctctcagGCTTCATTGCAAAACAGAGATGTTTCTAGCAGTGGACGGGTAGTTTCCATC
EST: gi|209714818|gb|BW657360.1|BW657360
EST:     TTCCAAGCAGGACCTCCCTCATTGCCCCAGAGAGAGTTGTGTTCAAGAAG                         GCTTCATTGCAAAACAGAGATGTTTCTAGCAGTGGACGGGTAGTTTCCATC
genomic: TTCCAAGCAGGACCTCCCTCATTGCCCCAGAGAGAGTTGTGTTCAAGAAGgtaatgtttc ... tgtctctcagGCTTCATTGCAAAACAGAGATGTTTCTAGCAGTGGACGGGTAGTTTCCATC
EST: gi|213595190|gb|DB962329.1|DB962329
EST:     TTCCAAGCAGGACCTCCCTCATTGCCCCAGAGAGAGTTGTGTTCAAGAAG                         GCTTCATTGCAAAACAGAGATGTTTCTAGCAGTGGACGGGTAGTTTCCATC
genomic: TTCCAAGCAGGACCTCCCTCATTGCCCCAGAGAGAGTTGTGTTCAAGAAGgtaatgtttc ... tgtctctcagGCTTCATTGCAAAACAGAGATGTTTCTAGCAGTGGACGGGTAGTTTCCATC
EST: gi|213589650|gb|DB965838.1|DB965838
EST:     TTCCAAGCAGGACCTCCCTCATTGCCCCAGAGAGAGTTGTGTTCAAGAAG                         GCTTCATTGCAAAACAGAGATGTTTCTAGCAGTGGACGGGTAGTTTCCATC
genomic: TTCCAAGCAGGACCTCCCTCATTGCCCCAGAGAGAGTTGTGTTCAAGAAGgtaatgtttc ... tgtctctcagGCTTCATTGCAAAACAGAGATGTTTCTAGCAGTGGACGGGTAGTTTCCATC
EST: gi|120533554|gb|EH261687.1|EH261687
EST:     TTCCAAGCAGGACCTCCCTCATTGCCCCAGAGAGAGTTGTGTTCAAGAAG                         GCTTCATTGCAAAACAGAGATGTTTCTAGCAGTGGACGGGTAGTTTCCATC
genomic: TTCCAAGCAGGACCTCCCTCATTGCCCCAGAGAGAGTTGTGTTCAAGAAGgtaatgtttc ... tgtctctcagGCTTCATTGCAAAACAGAGATGTTTCTAGCAGTGGACGGGTAGTTTCCATC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGCTGCGGTTAGTGCTGCAGTCTCTTTTCCATCCACCAAGTCTACCTCTCTTCCAAGCAGGACCTCCCTCATTGCCCCAGAGAGAGTTGTGTTCAAGAAGgtaatgtttcacaaacatttcattattgttttcttttttttagcacaaactttctcccattagaatttcatctcgatcaccaatgaggtgtaactcagtt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttctccc