Skip to another splice site:
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCCAATTGCGCTGATGAGAAGCCCAGTGAGGATGAACTCAAGGCTTGGGACGCTGATTTCGTCAAGGTTGATCAGGCCACACTCTTTGATCTCATTCTGgtgaggatttctcttctttatttctttttcttttctttttttggcttcttttgatggttagggattagggtttttgcgattgggggtttcggtgtttgtt...

Basic information

species Glycine max
transcript GLYMA02G05120.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G05120.1 (Glycine max), 5'ss of exon 1
lower sequence: EFJ22022 (Selaginella moellendorffii), 5'ss of exon 1
GGCCAATTGCGCTGATGAGAAGCCCAGTGAGGATGAACTCAAGGCTTGGGACGCTGATTTCGTCAAGGTTGATCAGGCCACACTCTTTGATCTCATTCTGgtgaggatttctcttctttatttctttttcttttctttttttggcttcttttgatggttagggattagggtttttgc-gattgggggtttcggtg-tttgtt---------------
 | | |   | |  | |    |||||  ||||| ||  ||||||| |||||||| || ||||||||||| |||||||| || ||||| || ||||| ||||| |||||||||    |  |||||||   |  || ||| | | |||| | | | |  || ||  ||  | |||   | ||     | ||| |||| | || |               
CGGCGACGACTCCAAGGTCGTGCCCACCGAGGAGGAGATCAAGGCCTGGGACGCCGAGTTCGTCAAGGTCGATCAGGCGACGCTCTTCGACCTCATCCTGgt-aggatttcttcgttcgatttcttcccccctt-tttctctcgcttttctcgtt--ttgggtcttgagctttcgactgacaatcgatttgggtgatctggttttgcgttgttccag

upper sequence: GLYMA02G05120.1 (Glycine max), 5'ss of exon 1
lower sequence: EFJ18284 (Selaginella moellendorffii), 5'ss of exon 1
GGCCAATTGCGCTGATGAGAAGCCCAGTGAGGATGAACTCAAGGCTTGGGACGCTGATTTCGTCAAGGTTGATCAGGCCACACTCTTTGATCTCATTCTGgtgaggatttctcttctttatttctttttcttttctttttttggcttcttttgatggttagggattagggtttttgc-gattgggggtttcggtg-tttgtt----
 | | |   | |  | |    |||||  ||||| ||  ||||||| |||||||| || ||||||||||| |||||||| || ||||| || ||||| ||||| |||||||||    |  |||||||   |  || ||| | | |||| | | | |  || ||  ||  | |||   | ||     | ||| |||| ||||||    
CGGCGACGACTCCAAGGTCGTGCCCACCGAGGAGGAGATCAAGGCCTGGGACGCCGAGTTCGTCAAGGTCGATCAGGCGACGCTCTTCGACCTCATCCTGgt-aggatttcttcgttcgatttcttcccccctt-tttctctcgcttttctcgtt--ttgggtcttgagctttcgactgacaatcgatttgggtgatttgttccag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298193047|gb|HO033481.1|HO033481
EST:     ACGCTGATTTCGTCAAGGTTGATCAGGCCACACTCTTTGATCTCATTCTG                         GCTGCAAATTACTTGAATATCAAGAGCCTTTTGGACCTTACTTGCCAGACA
genomic: ACGCTGATTTCGTCAAGGTTGATCAGGCCACACTCTTTGATCTCATTCTGgtgaggattt ... ttctatccagGCTGCAAATTACTTGAATATCAAGAGCCTTTTGGACCTTACTTGCCAGACA
EST: gi|193679320|gb|FK619306.1|FK619306
EST:     GCCACACTCTTGGATCTCATTCTG                         GCTGCAAATTACTTGAATATCAAGAGCCTTTTGGACCTTACTTGCCAGACA
genomic: GCCACACTCTTTGATCTCATTCTGgtgaggattt ... ttctatccagGCTGCAAATTACTTGAATATCAAGAGCCTTTTGGACCTTACTTGCCAGACA
EST: gi|208278693|gb|GE078724.1|GE078724
EST:     ACGCTGATTTCGTCAAGGTTGATCAGGCCACACTCTTTGATCTCATTCTG                         GCTGCAAAATTAACTTGAATATCA
genomic: ACGCTGATTTCGTCAAGGTTGATCAGGCCACACTCTTTGATCTCATTCTGgtgaggattt ... ttctatccagGCTGCAAA-TTA-CTTGAATATCA
EST: gi|151393422|gb|EV263297.1|EV263297
EST:     ACGCTGATTTCGTCAAGGTTGATCAGGCCACACTCTTTGATCTCATTCTG                         GCTGCAAATTACTTGAATATCAAGAGCCTTTTGGACCTTACTTGCCAGACA
genomic: ACGCTGATTTCGTCAAGGTTGATCAGGCCACACTCTTTGATCTCATTCTGgtgaggattt ... ttctatccagGCTGCAAATTACTTGAATATCAAGAGCCTTTTGGACCTTACTTGCCAGACA
EST: gi|18730224|gb|BM525756.1|BM525756
EST:     ACGCTGATTTCGTCAAGGTTGATCAGGCCACACTCTTTGATCTCATTCTG                         GCTGCAAATTACTTGAATATCAAGAGCCTTTTGGACCTTACTTGCCAGACA
genomic: ACGCTGATTTCGTCAAGGTTGATCAGGCCACACTCTTTGATCTCATTCTGgtgaggattt ... ttctatccagGCTGCAAATTACTTGAATATCAAGAGCCTTTTGGACCTTACTTGCCAGACA
EST: gi|298193407|gb|HO033841.1|HO033841
EST:     ACGCTGATTTCGTCAAGGTTGATCAGGCCACACTCTTTGATCTCATTCTG                         GCTGCAAATTACTTGAATATCAAGAGCCTTTTGGACCTTACTTGCCAGACA
genomic: ACGCTGATTTCGTCAAGGTTGATCAGGCCACACTCTTTGATCTCATTCTGgtgaggattt ... ttctatccagGCTGCAAATTACTTGAATATCAAGAGCCTTTTGGACCTTACTTGCCAGACA
EST: gi|208220523|gb|GE019871.1|GE019871
EST:     CCACACTCTTTGATCNCATTCTG                         GCTGCAAATTACTTGAATATCAAGAGCCTTTTGGACCTTACTTGCCAGACA
genomic: CCACACTCTTTGATCTCATTCTGgtgaggattt ... ttctatccagGCTGCAAATTACTTGAATATCAAGAGCCTTTTGGACCTTACTTGCCAGACA
EST: gi|209703841|gb|BW667909.1|BW667909
EST:     ACGCTGATTTCGTCAAGGTTGATCAGGCCACACTCTTTGATCTCATTCTG                         GCTGCAAATTACTTGAATATCAAGAGCCTTTTGGACCTTACTTGCCAGACA
genomic: ACGCTGATTTCGTCAAGGTTGATCAGGCCACACTCTTTGATCTCATTCTGgtgaggattt ... ttctatccagGCTGCAAATTACTTGAATATCAAGAGCCTTTTGGACCTTACTTGCCAGACA
EST: gi|193311677|gb|FK278121.1|FK278121
EST:     ATCTCATTCTTG                         GCTGCAAATTACTTGAATATCAAGAGCCTTTTGGACCTTACTTGCCAGAC
genomic: ATCTCATTC-TGgtgaggattt ... ttctatccagGCTGCAAATTACTTGAATATCAAGAGCCTTTTGGACCTTACTTGCCAGAC
EST: gi|151410563|gb|EV280378.1|EV280378
EST:     ACGCTGATTTCGTCAAGGTTGATCAGGCCACACTCTTTGATCTCATTCTG                         GCTGCAAATTACTTGAATATCAAGAGCCTTTTGGACCTTACTTGCCAGACA
genomic: ACGCTGATTTCGTCAAGGTTGATCAGGCCACACTCTTTGATCTCATTCTGgtgaggattt ... ttctatccagGCTGCAAATTACTTGAATATCAAGAGCCTTTTGGACCTTACTTGCCAGACA
EST: gi|208311096|gb|GE103390.1|GE103390
EST:     ACGCTGATTTCGTCAAGGTTGATCGGGCCACACTCTTTGATCTCATTCTG                         GCTGCAAATTACTTGAATATCAAGAGCCTTTTGGACCTTACT
genomic: ACGCTGATTTCGTCAAGGTTGATCAGGCCACACTCTTTGATCTCATTCTGgtgaggattt ... ttctatccagGCTGCAAATTACTTGAATATCAAGAGCCTTTTGGACCTTACT
EST: gi|193536362|gb|FK492738.1|FK492738
EST:     ACGCTGATTTCGTCAAGGTTGATCAGGCCACACTCTTTGATCTCATTCTG                         GCTGCAAATTACTTGAATATCAAGAGCCTTTTGGACCTTACTTGCCAGACA
genomic: ACGCTGATTTCGTCAAGGTTGATCAGGCCACACTCTTTGATCTCATTCTGgtgaggattt ... ttctatccagGCTGCAAATTACTTGAATATCAAGAGCCTTTTGGACCTTACTTGCCAGACA
EST: gi|192328672|gb|FK022500.1|FK022500
EST:     ACGCTGATTTCGTCAAGGTTGATCAGGCCACACTCTTTGATCTCATTCTG                         GCTGCAAATTACTTGAATATCAAGAGCCTTTTGGACCTTACTTGCCAGACA
genomic: ACGCTGATTTCGTCAAGGTTGATCAGGCCACACTCTTTGATCTCATTCTGgtgaggattt ... ttctatccagGCTGCAAATTACTTGAATATCAAGAGCCTTTTGGACCTTACTTGCCAGACA
EST: gi|208323900|gb|GE120077.1|GE120077
EST:     AGGCCACACTCTTTTGATCTCATTCTG                         GCTGCAAATTACTTGAATATCAAGAGCCTTTTGGACCTTACTTGCCAGACA
genomic: AGGCCACACTC-TTTGATCTCATTCTGgtgaggattt ... ttctatccagGCTGCAAATTACTTGAATATCAAGAGCCTTTTGGACCTTACTTGCCAGACA
EST: gi|24205493|gb|BU964746.1|BU964746
EST:     ACGCTGATTTCGTCAAGGTTGATCAGGCCACACTCTTTGATCTCATTCTG                         GCTGCAAATTACTTGAATATCAAGAGCCTTTTGGACCTTACTTGCCAGACA
genomic: ACGCTGATTTCGTCAAGGTTGATCAGGCCACACTCTTTGATCTCATTCTGgtgaggattt ... ttctatccagGCTGCAAATTACTTGAATATCAAGAGCCTTTTGGACCTTACTTGCCAGACA
EST: gi|298187603|gb|HO034752.1|HO034752
EST:     ACGCTGATTTCGTCAAGGTTGATCAGGCCACACTCTTTGATCTCATTCTG                         GCTGCAAATTACTTGAATATCAAGAGCCTTTTGGACCTTACTTGCCAGACA
genomic: ACGCTGATTTCGTCAAGGTTGATCAGGCCACACTCTTTGATCTCATTCTGgtgaggattt ... ttctatccagGCTGCAAATTACTTGAATATCAAGAGCCTTTTGGACCTTACTTGCCAGACA
EST: gi|18721739|gb|BM523356.1|BM523356
EST:     ACGCTGATTTCGTCAAGGTTGATCAGGCCACACTCTTTGATCTCATTCTG                         GCTGCAAATTACTTGAATATCAAGAGCCTTTTGGACCTTACTTGCCAGACA
genomic: ACGCTGATTTCGTCAAGGTTGATCAGGCCACACTCTTTGATCTCATTCTGgtgaggattt ... ttctatccagGCTGCAAATTACTTGAATATCAAGAGCCTTTTGGACCTTACTTGCCAGACA
EST: gi|254346208|gb|GR859821.1|GR859821
EST:     ACGCTGATTTCGTCAAGGTTGATCAGGCCACACTCTTTGATCTCATTCTG                         GCTGCAAATTACTTGAATATCAAGAGCCTTTTGGACCTTACTTGCCAGACA
genomic: ACGCTGATTTCGTCAAGGTTGATCAGGCCACACTCTTTGATCTCATTCTGgtgaggattt ... ttctatccagGCTGCAAATTACTTGAATATCAAGAGCCTTTTGGACCTTACTTGCCAGACA
EST: gi|193654987|gb|FK600043.1|FK600043
EST:     ACGCTGATTTCGTCAAGGTTGATCAGGCCACACTCTTTGATCTCATTCTG                         GCTGCAAATTACTTGAATATCAAGAGCCTTTTGGACCTTACTTGCCAG
genomic: ACGCTGATTTCGTCAAGGTTGATCAGGCCACACTCTTTGATCTCATTCTGgtgaggattt ... ttctatccagGCTGCAAATTACTTGAATATCAAGAGCCTTTTGGACCTTACTTGCCAG
EST: gi|9565332|gb|BE474841.1|BE474841
EST:     ACGCTGATTTCGTCAAGGTTGATCAGGCCACACTCTNTGATCTCATTCTG                         GCTGCAAATTACTTGAATATCAAGAGCCTTTTGGACCTTACTTGCCAGACA
genomic: ACGCTGATTTCGTCAAGGTTGATCAGGCCACACTCTTTGATCTCATTCTGgtgaggattt ... ttctatccagGCTGCAAATTACTTGAATATCAAGAGCCTTTTGGACCTTACTTGCCAGACA
EST: gi|193388189|gb|FK353886.1|FK353886
EST:     ACGCTGATTTCGTCAAGGTTGATCAGGCCACACTCTTTGATCTCATTCTG                         GCTGCAAATTACTTGAATATCAAGAGCCTTTTGGACCTTACTTGCCAGACA
genomic: ACGCTGATTTCGTCAAGGTTGATCAGGCCACACTCTTTGATCTCATTCTGgtgaggattt ... ttctatccagGCTGCAAATTACTTGAATATCAAGAGCCTTTTGGACCTTACTTGCCAGACA
EST: gi|298186705|gb|HO037338.1|HO037338
EST:     ACGCTGATTTCGTCAAGGTTGATCAGGCCACACTCTTTGATCTCATTCTG                         GCTGCAAATTACTTGAATATCAAGAGCCTTTTGGACCTTACTTGCCAGACA
genomic: ACGCTGATTTCGTCAAGGTTGATCAGGCCACACTCTTTGATCTCATTCTGgtgaggattt ... ttctatccagGCTGCAAATTACTTGAATATCAAGAGCCTTTTGGACCTTACTTGCCAGACA
EST: gi|24205469|gb|BU964722.1|BU964722
EST:     ACGCTGATTTCGTCAAGGTTGATCAGGCCACACTCTTTGATCTCATTCTG                         GCTGCAAATTACTTGAATATCAAGAGCCTTTTGGACCTTACTTGCCAGACA
genomic: ACGCTGATTTCGTCAAGGTTGATCAGGCCACACTCTTTGATCTCATTCTGgtgaggattt ... ttctatccagGCTGCAAATTACTTGAATATCAAGAGCCTTTTGGACCTTACTTGCCAGACA
EST: gi|193712033|gb|FK643484.1|FK643484
EST:     ATCAGGCCACACTCTTTGATCTCATTCTG                         GCTGCAAATTACTTGAATATCAAGAGCCTTTTGGACCTTACTTGCCAGACA
genomic: ATCAGGCCACACTCTTTGATCTCATTCTGgtgaggattt ... ttctatccagGCTGCAAATTACTTGAATATCAAGAGCCTTTTGGACCTTACTTGCCAGACA
EST: gi|192330803|gb|FK021590.1|FK021590
EST:     ACGCTGATTTCGTCAAGGTTGATCAGGCCACACTCTTTGATCTCATTCTG                         GCTGCAAATTACTTGAATATCAAGAGCCTTTTGGACCTTACTTGC
genomic: ACGCTGATTTCGTCAAGGTTGATCAGGCCACACTCTTTGATCTCATTCTGgtgaggattt ... ttctatccagGCTGCAAATTACTTGAATATCAAGAGCCTTTTGGACCTTACTTGC
EST: gi|193500629|gb|FK464888.1|FK464888
EST:     ACGCTGATTTCGTCAAGGTTGATCAGGCCACACTCTTTGATCTCATTCTG                         GCTGCAAATTACTTGAATATCAAGAGCCTTTTGGACCTTACTTGCCAGACA
genomic: ACGCTGATTTCGTCAAGGTTGATCAGGCCACACTCTTTGATCTCATTCTGgtgaggattt ... ttctatccagGCTGCAAATTACTTGAATATCAAGAGCCTTTTGGACCTTACTTGCCAGACA
EST: gi|298193928|gb|HO040576.1|HO040576
EST:     ACGCTGATTTCGTCAAGGTTGATCAGGCCACACTCTTTGATCTCATTCTG                         GCTGCAAATTACTTGAATATCAAGAGCCTTTTGGACCTTACTTGCCAGACA
genomic: ACGCTGATTTCGTCAAGGTTGATCAGGCCACACTCTTTGATCTCATTCTGgtgaggattt ... ttctatccagGCTGCAAATTACTTGAATATCAAGAGCCTTTTGGACCTTACTTGCCAGACA
EST: gi|208143196|gb|GD941948.1|GD941948
EST:     CGCTGATTTCGTCAAAGGTTGATCAGGCCACACTCTTTGATCTCATTCTG                         GCTGCAAATTACTTGAATATCAAGAGCCTTTTGGACCTTACTTGCCAGACA
genomic: CGCTGATTTCGTCAA-GGTTGATCAGGCCACACTCTTTGATCTCATTCTGgtgaggattt ... ttctatccagGCTGCAAATTACTTGAATATCAAGAGCCTTTTGGACCTTACTTGCCAGACA
EST: gi|193482701|gb|FK447464.1|FK447464
EST:     ACGCTGATTTCGTCAAGGTTGATCAGGCCACACTCTTTGATCTCATTCTG                         GCTGCAAATTACTTGAATATCAAGAGCCTTTTGGACCTTACTTGCCAGACA
genomic: ACGCTGATTTCGTCAAGGTTGATCAGGCCACACTCTTTGATCTCATTCTGgtgaggattt ... ttctatccagGCTGCAAATTACTTGAATATCAAGAGCCTTTTGGACCTTACTTGCCAGACA
EST: gi|298175255|gb|HO018136.1|HO018136
EST:     ACGCTGATTTCGTCAAGGTTGATCAGGCCACACTCTTTGATCTCATTCTG                         GCTGCAAATTACTTGAATATCAAGAGCCTTTTGGACCTTACTTGCCAGACA
genomic: ACGCTGATTTCGTCAAGGTTGATCAGGCCACACTCTTTGATCTCATTCTGgtgaggattt ... ttctatccagGCTGCAAATTACTTGAATATCAAGAGCCTTTTGGACCTTACTTGCCAGACA
EST: gi|298194271|gb|HO040919.1|HO040919
EST:     ACGCTGATTTCGTCAAGGTTGATCAGGCCACACTCTTTGATCTCATTCTG                         GCTGCAAATTACCTGAATATCAAGAGCCTTTTGGACCTTACTTGCCAGACA
genomic: ACGCTGATTTCGTCAAGGTTGATCAGGCCACACTCTTTGATCTCATTCTGgtgaggattt ... ttctatccagGCTGCAAATTACTTGAATATCAAGAGCCTTTTGGACCTTACTTGCCAGACA
EST: gi|208320170|gb|GE122031.1|GE122031
EST:     ACGCTGATTTCGTCAAGGTTGATCAGGCCACACTCTTTGATCTCATTCTG                         GCTGCAAATTACTTGAATATCAAGAGCCTTTTGGACCTTACTTGCCAGACA
genomic: ACGCTGATTTCGTCAAGGTTGATCAGGCCACACTCTTTGATCTCATTCTGgtgaggattt ... ttctatccagGCTGCAAATTACTTGAATATCAAGAGCCTTTTGGACCTTACTTGCCAGACA
EST: gi|298182570|gb|HO031305.1|HO031305
EST:     ACGCTGATTTCGTCAAGGTTGATCAGGCCACACTCTTTGATCTCATTCTG                         GCTGCAAATTACTTGAATATCAAGAGCCTTTTGGACCTTACTTGCCAGACA
genomic: ACGCTGATTTCGTCAAGGTTGATCAGGCCACACTCTTTGATCTCATTCTGgtgaggattt ... ttctatccagGCTGCAAATTACTTGAATATCAAGAGCCTTTTGGACCTTACTTGCCAGACA
EST: gi|208170595|gb|GD967450.1|GD967450
EST:     ACGCTGATTTCGTCAAGGTTGATCAGGCCACACTCTTTGATCTCATTCTG                         GCTGCAAAATTACTTGAATATCAAGAGCCTTTTGGACCTTACT
genomic: ACGCTGATTTCGTCAAGGTTGATCAGGCCACACTCTTTGATCTCATTCTGgtgaggattt ... ttctatccagGCTGCAAA-TTACTTGAATATCAAGAGCCTTTTGGACCTTACT
EST: gi|23731441|gb|BU763846.1|BU763846
EST:     ACGCTGATTTCGTCAAGGTTGATCAGGCCACACTCTTTGATCTCATTCTG                         GCTGCAAATTACTTGAATATCAAGAGCCTTTTGGACCTTACTTGCCAGACA
genomic: ACGCTGATTTCGTCAAGGTTGATCAGGCCACACTCTTTGATCTCATTCTGgtgaggattt ... ttctatccagGCTGCAAATTACTTGAATATCAAGAGCCTTTTGGACCTTACTTGCCAGACA
EST: gi|208146977|gb|GD949264.1|GD949264
EST:     CCACACTCTTTGATCTCATTCTG                         ACTGCAAATTACTTGAATATCAAGAGCCTTTTGGACCTTACTTGCCAGACA
genomic: CCACACTCTTTGATCTCATTCTGgtgaggattt ... ttctatccagGCTGCAAATTACTTGAATATCAAGAGCCTTTTGGACCTTACTTGCCAGACA
EST: gi|193617256|gb|FK567474.1|FK567474
EST:     ACGCTGATTTCGTCAAGGTTGATCAGGCCACACTCTTTGATCTCATTCTG                         GCTGCAAATTACTTGAATATCAAGAGCCTTTTGGACCTTACTTGCCAGACA
genomic: ACGCTGATTTCGTCAAGGTTGATCAGGCCACACTCTTTGATCTCATTCTGgtgaggattt ... ttctatccagGCTGCAAATTACTTGAATATCAAGAGCCTTTTGGACCTTACTTGCCAGACA
EST: gi|18041411|gb|BM309705.1|BM309705
EST:     ACGCTGATTTCGTCAAGGTTGATCAGGCCACACTCTTTGATCTCATTCTG                         GCTGCAAATTACTTGAATATCAAGAGCCTTTTGGACCTTACTTGCCAGACA
genomic: ACGCTGATTTCGTCAAGGTTGATCAGGCCACACTCTTTGATCTCATTCTGgtgaggattt ... ttctatccagGCTGCAAATTACTTGAATATCAAGAGCCTTTTGGACCTTACTTGCCAGACA
EST: gi|208034717|gb|GD835915.1|GD835915
EST:     ACGCTGATTTCGTCAAGGTTGATCAGGCCACACTCTTTGATCTCATTCTG                         GCTGCAAATTACTTGAATATCAAGAGCC
genomic: ACGCTGATTTCGTCAAGGTTGATCAGGCCACACTCTTTGATCTCATTCTGgtgaggattt ... ttctatccagGCTGCAAATTACTTGAATATCAAGAGCC
EST: gi|193570468|gb|FK524937.1|FK524937
EST:     GCCACACTCTTGGATCTCATTCTG                         GCTGCAAATTACTTGAATATCAAGAGCCTTTTGGACCTTACTTGCCAGACA
genomic: GCCACACTCTTTGATCTCATTCTGgtgaggattt ... ttctatccagGCTGCAAATTACTTGAATATCAAGAGCCTTTTGGACCTTACTTGCCAGACA
EST: gi|193714476|gb|FK655047.1|FK655047
EST:     ACGCTGATTTCGTCAAGGTTGATCAGGCCACACTCTTTGATCTCATTCTG                         GCTGCAAATTACTTGAATATCAAGAGCCTTTTGGACCTTACTTGCCAGACA
genomic: ACGCTGATTTCGTCAAGGTTGATCAGGCCACACTCTTTGATCTCATTCTGgtgaggattt ... ttctatccagGCTGCAAATTACTTGAATATCAAGAGCCTTTTGGACCTTACTTGCCAGACA
EST: gi|298180398|gb|HO025599.1|HO025599
EST:     ACGCTGATTTCGTCAAGGTTGATCAGGCCACACTCTTTGATCTCATTCTG                         GCCGCAAATTACTTGAATATCAAGAGCCTTTTGGACCTTACTTGCCAGACA
genomic: ACGCTGATTTCGTCAAGGTTGATCAGGCCACACTCTTTGATCTCATTCTGgtgaggattt ... ttctatccagGCTGCAAATTACTTGAATATCAAGAGCCTTTTGGACCTTACTTGCCAGACA
EST: gi|151396793|gb|EV266666.1|EV266666
EST:     ACGCTGATTTCGTCAAGGTTGATCAGGCCACACTCTTTGATCTCATTCTG                         GCTGCAAATTACTTGAATATCAAGAGCCTTTTGGACCTTACTTGCCAGACA
genomic: ACGCTGATTTCGTCAAGGTTGATCAGGCCACACTCTTTGATCTCATTCTGgtgaggattt ... ttctatccagGCTGCAAATTACTTGAATATCAAGAGCCTTTTGGACCTTACTTGCCAGACA
EST: gi|298182704|gb|HO031439.1|HO031439
EST:     ACGCTGATTTCGTCAAGGTTGATCAGGCCACACTCTTTGATCTCATTCTG                         GCTGCAAATTACTTGAATATCAAGAGCCTTTTGGACCTTACTTGCCAGACA
genomic: ACGCTGATTTCGTCAAGGTTGATCAGGCCACACTCTTTGATCTCATTCTGgtgaggattt ... ttctatccagGCTGCAAATTACTTGAATATCAAGAGCCTTTTGGACCTTACTTGCCAGACA
EST: gi|207689106|gb|GD673459.1|GD673459
EST:     ACGCTGATTTCGTCAAGGTTGATCAGGCCACACTCTTTGATCTCATTCTG                         GCTGCAAATTACTTGAATATCAAGAGCCTTTTGGACCTTACTTGCCAGACA
genomic: ACGCTGATTTCGTCAAGGTTGATCAGGCCACACTCTTTGATCTCATTCTGgtgaggattt ... ttctatccagGCTGCAAATTACTTGAATATCAAGAGCCTTTTGGACCTTACTTGCCAGACA
EST: gi|6455317|gb|AW186000.1|AW186000
EST:     ACGCTGATTTCGTCAAGGTTGATCAGGCCACACTCTTTGATCTCATTCTG                         GCTGCAAATTACTTGAATATCAAGAGCCTTTTGGACCTTACTTGCCAGACA
genomic: ACGCTGATTTCGTCAAGGTTGATCAGGCCACACTCTTTGATCTCATTCTGgtgaggattt ... ttctatccagGCTGCAAATTACTTGAATATCAAGAGCCTTTTGGACCTTACTTGCCAGACA
EST: gi|26269115|gb|CA820178.1|CA820178
EST:     ACGCTGATTTCGTCAAGGTTGATCAGGCCACACTCTTTGATCTCATTCTG                         GCTGCAAATTACTTGAATATCAAGAGCCTTTTGGACCTTACTTGCCAGACA
genomic: ACGCTGATTTCGTCAAGGTTGATCAGGCCACACTCTTTGATCTCATTCTGgtgaggattt ... ttctatccagGCTGCAAATTACTTGAATATCAAGAGCCTTTTGGACCTTACTTGCCAGACA
EST: gi|192301006|gb|FG990106.1|FG990106
EST:     ACGCTGATTTCGTCAAGGTTGATCAGGCCACACTCTTTGATCTCATTCTG                         GCTGCAAATTACTTGAATATCAAGAGCCTTTTGGACCTTACTTGCCAGACA
genomic: ACGCTGATTTCGTCAAGGTTGATCAGGCCACACTCTTTGATCTCATTCTGgtgaggattt ... ttctatccagGCTGCAAATTACTTGAATATCAAGAGCCTTTTGGACCTTACTTGCCAGACA
EST: gi|208150590|gb|GD949459.1|GD949459
EST:     ACGCTGATTTCGTCAAGGTTGATCAGGCCACACTCTTTGATCTCATTCTG                         GCTGCAAATTACTTGAATATCAAGAGCCTTTTGGACCTTACTTGCCAGACA
genomic: ACGCTGATTTCGTCAAGGTTGATCAGGCCACACTCTTTGATCTCATTCTGgtgaggattt ... ttctatccagGCTGCAAATTACTTGAATATCAAGAGCCTTTTGGACCTTACTTGCCAGACA
EST: gi|193703846|gb|FK640992.1|FK640992
EST:     ACGCTGATTTCGTCAAGGTTGATCAGGCCACACTCTTTGATCTCATTCTG                         GCTGCAAATTACTTGAATATCAAGAGCCTTTTGGACCTTACTTGCCAGACA
genomic: ACGCTGATTTCGTCAAGGTTGATCAGGCCACACTCTTTGATCTCATTCTGgtgaggattt ... ttctatccagGCTGCAAATTACTTGAATATCAAGAGCCTTTTGGACCTTACTTGCCAGACA
EST: gi|298199233|gb|HO042596.1|HO042596
EST:     ACGCTGATTTCGTCAAGGTTGATCAGGCCACACTCTTTGATCTCATTCTG                         GCTGCAAATTACTTGAATATCAAGAGCCTTTTGGACCTTACTTGCCAGACA
genomic: ACGCTGATTTCGTCAAGGTTGATCAGGCCACACTCTTTGATCTCATTCTGgtgaggattt ... ttctatccagGCTGCAAATTACTTGAATATCAAGAGCCTTTTGGACCTTACTTGCCAGACA
EST: gi|26045670|gb|CA783179.1|CA783179
EST:     ACGCTGATTTCGTCAAGGTTGATCAGGCCACACTCTTTGATCTCATTCTG                         GCTGCAAATTACTTGAATATCAAGAGCCTTTTGGACCTTACTTGCCAGACA
genomic: ACGCTGATTTCGTCAAGGTTGATCAGGCCACACTCTTTGATCTCATTCTGgtgaggattt ... ttctatccagGCTGCAAATTACTTGAATATCAAGAGCCTTTTGGACCTTACTTGCCAGACA
EST: gi|18848580|gb|BM567743.1|BM567743
EST:     ACGCTGATTTCGTCAAGGTTGATCAGGCCACACTCTTTGATCTCATTCTG                         GCTGCAAATTACTTGAATATCAAGAGCCTTTTGGACCTTACTTGCCAGACA
genomic: ACGCTGATTTCGTCAAGGTTGATCAGGCCACACTCTTTGATCTCATTCTGgtgaggattt ... ttctatccagGCTGCAAATTACTTGAATATCAAGAGCCTTTTGGACCTTACTTGCCAGACA
EST: gi|208113513|gb|GD911152.1|GD911152
EST:     CAGGCCACACTCTTTGATCTCATTCTG                         GCTGCAAATTACTTGAATATCAAGAGCCTTTTGGACCTTACTTGCCAGACA
genomic: CAGGCCACACTCTTTGATCTCATTCTGgtgaggattt ... ttctatccagGCTGCAAATTACTTGAATATCAAGAGCCTTTTGGACCTTACTTGCCAGACA
EST: gi|193347702|gb|FK313490.1|FK313490
EST:     CTGATTTCGTTCTAAGGTTGTATCAGGCCACACTCTTTGATCTCATTCTG                         GCTGCAAATTACTTGAATATCAAGAGCCTTTTGGACCTTACTTGCCAGACA
genomic: CTGATTTCG-TC-AAGGTTG-ATCAGGCCACACTCTTTGATCTCATTCTGgtgaggattt ... ttctatccagGCTGCAAATTACTTGAATATCAAGAGCCTTTTGGACCTTACTTGCCAGACA
EST: gi|298185296|gb|HO030509.1|HO030509
EST:     ACGCTGATTTCGTCAAGGTTGATCAGGCCACACTCTTTGATCTCATTCTG                         GCTGCGAATTACTTGAATATCAAGAGCCTTTTGGA
genomic: ACGCTGATTTCGTCAAGGTTGATCAGGCCACACTCTTTGATCTCATTCTGgtgaggattt ... ttctatccagGCTGCAAATTACTTGAATATCAAGAGCCTTTTGGA
EST: gi|208129245|gb|GD930953.1|GD930953
EST:     TTGATCAGGCCACACTCTTTGATCTCATTCTG                         GCTGCAAATTACTTGAATATCAAGAGCCTTTTGGACCTTACTTGCCAGACA
genomic: TTGATCAGGCCACACTCTTTGATCTCATTCTGgtgaggattt ... ttctatccagGCTGCAAATTACTTGAATATCAAGAGCCTTTTGGACCTTACTTGCCAGACA
EST: gi|298166618|gb|HO010057.1|HO010057
EST:     ACGCTGATTTCGTCAAGGTTGATCAGGCCACACTCTTTGATCTCATTCTG                         GCTGCAAATTACTTGAATATCAAGAGCCTTTTGGACCTTACTTGCCAGACA
genomic: ACGCTGATTTCGTCAAGGTTGATCAGGCCACACTCTTTGATCTCATTCTGgtgaggattt ... ttctatccagGCTGCAAATTACTTGAATATCAAGAGCCTTTTGGACCTTACTTGCCAGACA
EST: gi|192329623|gb|FK021909.1|FK021909
EST:     ACGCTGATTTCGTCAAGGTTGATCAGGCCACACTCTTTGATCTCATTCTG                         GCTGCAAATTACTTGAATATCAAGAGCCTTTTGGACCTTACTTGCCAGACA
genomic: ACGCTGATTTCGTCAAGGTTGATCAGGCCACACTCTTTGATCTCATTCTGgtgaggattt ... ttctatccagGCTGCAAATTACTTGAATATCAAGAGCCTTTTGGACCTTACTTGCCAGACA
EST: gi|208301364|gb|GE098245.1|GE098245
EST:     ACGCTGATTTCGTCAAGGTTGATCAGGCCACACTCTTTGATCTCATTCTG                         GCTGCAAATTACTTGAATATCAAGAGCCTTTTGGACCTTACTTGCCAGACA
genomic: ACGCTGATTTCGTCAAGGTTGATCAGGCCACACTCTTTGATCTCATTCTGgtgaggattt ... ttctatccagGCTGCAAATTACTTGAATATCAAGAGCCTTTTGGACCTTACTTGCCAGACA
EST: gi|16346629|gb|BI972224.1|BI972224
EST:     ACGCTGATTTCGTCAAGGTTGATCAGGCCACACTCTTTGATCTCATTCTG                         GCTGCAAATTACTTGAATATCAAGAGCCTTTTGGACCTTACTTGCCAGACA
genomic: ACGCTGATTTCGTCAAGGTTGATCAGGCCACACTCTTTGATCTCATTCTGgtgaggattt ... ttctatccagGCTGCAAATTACTTGAATATCAAGAGCCTTTTGGACCTTACTTGCCAGACA
EST: gi|11688963|gb|BF596701.1|BF596701
EST:     ACGCTGATTTCGTCAAGGTTGATCAGGCCACACTCTTTGATCTCATTCTG                         GCTGCAAATTACTTGAATATCAAGAGCCTTTTGGACCTTACTTGCCAGACA
genomic: ACGCTGATTTCGTCAAGGTTGATCAGGCCACACTCTTTGATCTCATTCTGgtgaggattt ... ttctatccagGCTGCAAATTACTTGAATATCAAGAGCCTTTTGGACCTTACTTGCCAGACA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGCCAATTGCGCTGATGAGAAGCCCAGTGAGGATGAACTCAAGGCTTGGGACGCTGATTTCGTCAAGGTTGATCAGGCCACACTCTTTGATCTCATTCTGgtgaggatttctcttctttatttctttttcttttctttttttggcttcttttgatggttagggattagggtttttgcgattgggggtttcggtgtttgtt

- - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttggggg