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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCGCCCTCTCGAGGACGATTGCCAGCTCCAGATCTTCAAGTTCGACGACGACGAAGGCCGCGACACCTTCTGGCACTCCAGCGCCCACATTCTCGGCCAGgttctgctccattcagttgttttattaatttctttcaatttggattgtgacgaactaatgattatgattattattattggttatttgtag

Basic information

species Glycine max
transcript GLYMA02G03750.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G03750.1 (Glycine max), 5'ss of exon 1
lower sequence: PP1S400_36V6.1 (Physcomitrella patens), 5'ss of exon 3
TCGCCCTCTCGAGGACGATTGCCAGCTCCAGATCTTCAAGTTCGACGACGACGAAGGCCGCGACACCTTCTGGCACTCCAGCGCCCACATTCTCGGCCAGgttct------gctccattca-gttgttttattaatttctttcaatt-tggattgtgacgaactaatgattatgattattattattggttatttgtag---------------------
  | ||  | |||| ||| |||   || ||| |   ||| || ||    ||| | || |||||||||||||||||||| || || |||||||| ||||||||| |      |  |  || |  ||  |  | | ||||  ||   |  |   ||| |  | | ||       ||   |      |||    ||  | |                     
GAGACCATTGGAGGGCGACTGCACTCTACAGTTACACAAATTTGAGTCAGACAAGGGTCGCGACACCTTCTGGCACTCGAGTGCTCACATTCTTGGCCAGgttttttgttcgtcctttttacattcatgcagtgatttggtttggtcattagttgcgttgcaatatgagacttggcgacagcacttgacagttctttggatgtgtatttcccattgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22540425|gb|BU090268.1|BU090268
EST:     ACGAAGGCCGCGACACCTTCTGGCACTCCAGCGCCCACATTCTCGGCCAG                         TCACTTGAGACGGAGTATGGATGCAAGCTCTGCATTGGGCCTTGCACTACA
genomic: ACGAAGGCCGCGACACCTTCTGGCACTCCAGCGCCCACATTCTCGGCCAGgttctgctcc ... ttatttgtagTCACTTGAGACGGAGTATGGATGCAAGCTCTGCATTGGGCCTTGCACTACA