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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAATTCTCTGTTCACGTTCACATCTTTTATAACCCGTTCCATCTTTTGCTTTCTCCTGGGACTGCACCCTTCACTCACAAGTCACCAGTCTCTCTCTTAGgttcatcttgttcttttcttaaccccatttttgcttaaaaaattgtttttgatgttctaggaaggtttgtttatgaaaccaagtgatgcccatttgcttt...

Basic information

species Glycine max
transcript GLYMA02G02400.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22541678|gb|BU091521.1|BU091521
EST:     TTCTCCTGGGACTGCACCCGTCACTCACAAGTCACCAGTCTCTCTCTTAG                         GTTGTGACTTGTGAGGATGTCAACTCCTGCAAGGAAGAGACTCATGAGAGA
genomic: TTCTCCTGGGACTGCACCCTTCACTCACAAGTCACCAGTCTCTCTCTTAGgttcatcttg ... tggaatatagGTTGTGACTTGTGAGGATGTCAACTCCTGCAAGGAAGAGACTCATGAGAGA
EST: gi|192329123|gb|FK019738.1|FK019738
EST:     TTCTCCTGGGACTGCACCCTTCACTCACAAGTCACCAGTCTCTCTCTTAG                         GTTGTGACTTGTGAGGATGTCAACTCCTGCAAGGAAGAGACTCATGAGAGA
genomic: TTCTCCTGGGACTGCACCCTTCACTCACAAGTCACCAGTCTCTCTCTTAGgttcatcttg ... tggaatatagGTTGTGACTTGTGAGGATGTCAACTCCTGCAAGGAAGAGACTCATGAGAGA
EST: gi|192330836|gb|FK021609.1|FK021609
EST:     TTCTCCTGGGACTGCACCCTTCACTCGCAAGTCACCAGTCTCTCTCTTAG                         GTTGTGACTTGTGAGGATGTCAACTCCTGCAAGGAAGAGACTCATGAGAGA
genomic: TTCTCCTGGGACTGCACCCTTCACTCACAAGTCACCAGTCTCTCTCTTAGgttcatcttg ... tggaatatagGTTGTGACTTGTGAGGATGTCAACTCCTGCAAGGAAGAGACTCATGAGAGA
EST: gi|207726195|gb|GD701483.1|GD701483
EST:     TTCTCCTGGGACTGCACCCTTCACTCACAAGTCACCAGTCTCTCTCTTAG                         GTTGTGACTTGTAAGGATGTCAACTCCTGCAAGGAAGAGACTCATGAGAGA
genomic: TTCTCCTGGGACTGCACCCTTCACTCACAAGTCACCAGTCTCTCTCTTAGgttcatcttg ... tggaatatagGTTGTGACTTGTGAGGATGTCAACTCCTGCAAGGAAGAGACTCATGAGAGA
EST: gi|298164392|gb|HO014037.1|HO014037
EST:     TTCTCCTGGGACTGCACCCTTCACTCACAAGTCACCAGTCTCTCTCTTAG                         GTTGTGACTTGTGAGGATGTCAACTCCTGCAAGGAAGAGACTCATGAGAGA
genomic: TTCTCCTGGGACTGCACCCTTCACTCACAAGTCACCAGTCTCTCTCTTAGgttcatcttg ... tggaatatagGTTGTGACTTGTGAGGATGTCAACTCCTGCAAGGAAGAGACTCATGAGAGA
EST: gi|298180824|gb|HO022263.1|HO022263
EST:     TTCTCCTGGGACTGCACCCTTCACTCACAAGTCACCAGTCTCTCTCTTAG                         GTTGTGACTTGTGAGGATGTCAACTCCTGCAAGGAAGAGACTCATGAGAGA
genomic: TTCTCCTGGGACTGCACCCTTCACTCACAAGTCACCAGTCTCTCTCTTAGgttcatcttg ... tggaatatagGTTGTGACTTGTGAGGATGTCAACTCCTGCAAGGAAGAGACTCATGAGAGA
EST: gi|298178672|gb|HO024407.1|HO024407
EST:     TTCTCCTGGGACTGCACCCTTCACTCACAAGTCACCAGTCTCTCTCTTAG                         GTTGTGACTTGTGAGGATGTCAACTCCTGCAAGGAAGAGACTCATGAGAGA
genomic: TTCTCCTGGGACTGCACCCTTCACTCACAAGTCACCAGTCTCTCTCTTAGgttcatcttg ... tggaatatagGTTGTGACTTGTGAGGATGTCAACTCCTGCAAGGAAGAGACTCATGAGAGA
EST: gi|151394718|gb|EV264589.1|EV264589
EST:     GCACCCTTCACTCACAAGTCACCAGTCTCTCTCTTAG                         GTTGTGACTTGTGAGGATGTCAACTCCTGCAAGGAAAAGACTCATGAGAGA
genomic: GCACCCTTCACTCACAAGTCACCAGTCTCTCTCTTAGgttcatcttg ... tggaatatagGTTGTGACTTGTGAGGATGTCAACTCCTGCAAGGAAGAGACTCATGAGAGA
EST: gi|298179938|gb|HO025153.1|HO025153
EST:     ACTGCACCCTTCACTCACAAGTCACCAGTCTCTCTCTTAG                         GTTGTGACTTGTGAGGATGTCAACTCCTGCAAGGAAGAGACTCATGAGAGA
genomic: ACTGCACCCTTCACTCACAAGTCACCAGTCTCTCTCTTAGgttcatcttg ... tggaatatagGTTGTGACTTGTGAGGATGTCAACTCCTGCAAGGAAGAGACTCATGAGAGA
EST: gi|151405335|gb|EV275149.1|EV275149
EST:     GGGACTGCACCCTTCACTCACAAGTCACCAGTCTCTCTCTTAG                         GTTGTGACTTGTGAGGATGTCAACTCCTGCAAGGAAGAGACTCATGAGAGA
genomic: GGGACTGCACCCTTCACTCACAAGTCACCAGTCTCTCTCTTAGgttcatcttg ... tggaatatagGTTGTGACTTGTGAGGATGTCAACTCCTGCAAGGAAGAGACTCATGAGAGA
EST: gi|254334254|gb|GR849172.1|GR849172
EST:     TTCTCCTGGGACTGCACCCTTCACTCACAAGTCACCAGTCTCTCTCTTAG                         GTTGTGACTTGTGAGGATGTCAACTCCTGCAAGGAAGAGACTCATGAGAGA
genomic: TTCTCCTGGGACTGCACCCTTCACTCACAAGTCACCAGTCTCTCTCTTAGgttcatcttg ... tggaatatagGTTGTGACTTGTGAGGATGTCAACTCCTGCAAGGAAGAGACTCATGAGAGA
EST: gi|298175146|gb|HO014949.1|HO014949
EST:     TTCTCCTGGGACTGCACCCTTCACTCACAAGTCACCAGTCTCTCTCTTAG                         GTTGTGACTTGTGAGGATGTCAACTCCTGCAAGGAAGAGACTCATGAGAGA
genomic: TTCTCCTGGGACTGCACCCTTCACTCACAAGTCACCAGTCTCTCTCTTAGgttcatcttg ... tggaatatagGTTGTGACTTGTGAGGATGTCAACTCCTGCAAGGAAGAGACTCATGAGAGA