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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGCTCATGGCGGAGGGCTCCGTCGCATCCTTGTGCTCGCCTTCTGCGTCGCCGGAATCTGGTCCGCGTACATCTACCAAGGCGTTCTTCAGGAAAATGTgtaagaatccctatccgctccgaaactctcgagctcgcggtgaatttcgaaatgccgctactaattgctatgattttcgtttttttttttttttggtttcag

Basic information

species Glycine max
transcript GLYMA02G02330.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G02330.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os06g39260.1 (Oryza sativa), 5'ss of exon 1
-AGGCTCATGGCGGAGGGCTCCGTCGCATCCTTGTGCTCGCCTTCTGCGTCGCCGGAATCTGGTCCGCGTACATCTACCAAGGCGTTCTTCAGGAAAATGTgtaagaatccctatccgctccgaaactctcgagctcgcggtgaatttcgaaatgccgctactaattgctatgattttcgtttttttttttttttggtttcag--------------------------------------
  |||  | || | | ||   || ||| |    |||||||| |||||||||||||| |||||||| |||||||||  ||| ||||| || |||||||   ||||||   ||   ||| ||||    ||| |   ||| |  |   | || || ||  |||    |  |    |   || |  | |  ||      | ||                                          
GCGGCGGAGGGAGCATGGTGTCG-CGCGTGGCCGTGCTCGCATTCTGCGTCGCCGGGATCTGGTCGGCGTACATCACCCAGGGCGTCCTCCAGGAAACCCTgtaagcgcccgcctcc-ctccctccctccctctctctctctctctctctaa-tggtgctcgggagcggaggggaattgggctctgcttcggcgagtttctgaaaattgttcgccgttttctctccccgccgttcgttcag

upper sequence: GLYMA02G02330.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G176029_T01 (Zea mays), 5'ss of exon 1
-AGGCTCATGGCGGAGGGCTCCGTCGCATCCTTGTGCTCGCCTTCTGCGTCGCCGGAATCTGGTCCGCGTACATCTACCAAGGCGTTCTTCAGGAAAATGTgtaagaatccctatccgctccgaaactctc--gagctcgcggtgaatttcgaaatgccgctactaattgctatgattttcgtttttttttttttttggtttcag
  |||    || | | |||   | ||| |    || ||||||||||| ||||| || ||||||||||| ||||||||||| ||||| || ||||| | | ||||||   |||   |          || ||   ||  |||     | || || | ||||     ||||    ||| ||| | |      |  ||  |       
TCGGCGGCGGGAGCATGGCGGGG-CGCGTGGCCGTCCTCGCCTTCTGTGTCGCAGGGATCTGGTCCGCCTACATCTACCAGGGCGTCCTCCAGGAGACTCTgtaagcccccccccctctctaattgctgtccgaagtccgctacacaattagacaagccggggtcaatt-tggtgagttt-gctcgccggtggttcag-------

upper sequence: GLYMA02G02330.1 (Glycine max), 5'ss of exon 1
lower sequence: AT2G02810.1 (Arabidopsis thaliana), 5'ss of exon 1
AGGCTCATGGCGGAGGGCTCCGTCGCATCCTTGTGCTCGCCTTCTGCGTCGCCGGAATCTGGTCCGCGTACATCTACCAAGGCGTTCTTCAGGAAAATGTgtaagaatccctatccgctc----cgaaactc-tcgagctcgcggtgaatttcgaaatgccgctac----taattgctatg-----att--ttcgtttttttttt---tttttggtttcag---------------------------------------------------------------------
|||  ||||||   ||  ||||||| || ||  || | || || ||  || |||| ||||||||||| ||||||||||||||||||||||| || | | |||||| |    | |  | ||    |||  ||| |||   ||   |     |||    ||  | | |    || ||||||       |||  ||||||| | ||     | | |||||| |                                                                      
AGGTCCATGGCTCCGGATTCCGTCGAATTCTGTTGTTGGCGTTGTGTATCTCCGGGATCTGGTCCGCCTACATCTACCAAGGCGTTCTTCAAGAGACTCTgtaagtaaaattgttaggtcatatcgattctcgtcgtcttcattgctcgattcagcttgttgttgcgaaatagttgctacagagtcattgattcgtttctattcgcaatctgtggtttgaatttctatagacatagctgccggaatttgttcttggtacatggactaatgaaattcgtttatctgattag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192298869|gb|FG987614.1|FG987614
EST:     GCCGGAATCTGGTCCGCGTACATCTACCAAGGCGTTCTTCAGGAAAATGT                         GTCGACGAAGCGATTCAACGGTGAAAGGTTCGAGCACCTTGCGTTTCTGAA
genomic: GCCGGAATCTGGTCCGCGTACATCTACCAAGGCGTTCTTCAGGAAAATGTgtaagaatcc ... ttggtttcagGTCGACGAAGCGATTCAACGGTGAAAGGTTCGAGCACCTTGCGTTTCTGAA
EST: gi|209721388|gb|BW654584.1|BW654584
EST:     GCCGGAATCTGGTCCGCGTACATCTACCAAGGCGTTCTTCAGGAAAATGT                         GTCGACGAAGCGATTCAACGGTGAAAGGTTCGAGCACCTTGCGTTTCTGAA
genomic: GCCGGAATCTGGTCCGCGTACATCTACCAAGGCGTTCTTCAGGAAAATGTgtaagaatcc ... ttggtttcagGTCGACGAAGCGATTCAACGGTGAAAGGTTCGAGCACCTTGCGTTTCTGAA
EST: gi|192304303|gb|FG996443.1|FG996443
EST:     GCCGGAATCTGGTCCGCGTACATCTACCAAGGCGTTCTTCGGGAAAATGT                         GTCGACGAAGCGATTCAACGGTGAAAGGTTCGAGCACCTTGCGTTTCTGAA
genomic: GCCGGAATCTGGTCCGCGTACATCTACCAAGGCGTTCTTCAGGAAAATGTgtaagaatcc ... ttggtttcagGTCGACGAAGCGATTCAACGGTGAAAGGTTCGAGCACCTTGCGTTTCTGAA
EST: gi|213615395|gb|DB965495.1|DB965495
EST:     GCCGGAATCTGGTCCGCGTACATCTACCAAGGCGTTCTTCAGGAAAATGT                         GTCGACGAAGCGATTCAACGGTGAAAGGTTCGAGCACCTTGCGTTTCTGAA
genomic: GCCGGAATCTGGTCCGCGTACATCTACCAAGGCGTTCTTCAGGAAAATGTgtaagaatcc ... ttggtttcagGTCGACGAAGCGATTCAACGGTGAAAGGTTCGAGCACCTTGCGTTTCTGAA
EST: gi|151411658|gb|EV281469.1|EV281469
EST:     GCCGGAATCTGGTCCGCGTACATCTACCAAGGCGTTCTTCAGGAAAATGT                         GTCGACGAAGCGATTCAACGGTGAAAGGTTCGAGCACCTTGCGTTTCTGAA
genomic: GCCGGAATCTGGTCCGCGTACATCTACCAAGGCGTTCTTCAGGAAAATGTgtaagaatcc ... ttggtttcagGTCGACGAAGCGATTCAACGGTGAAAGGTTCGAGCACCTTGCGTTTCTGAA