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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGACACTCTCTATGATCACAAAGGCCTTCATTACTTCAACAACTGCTCTATTCAAGGTTCTGTTCTTTTCATCTTCGGTTCCGCCAGGTCCCTTTACGAGgtcttctttcgtttcctacctttttttttcttctttttcgtgtctggacttgaccaaggtccaaacatgccgttttttagcacaacaatatagcccaata...

Basic information

species Glycine max
transcript GLYMA02G01310.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G01310.1 (Glycine max), 5'ss of exon 1
lower sequence: EFJ23829 (Selaginella moellendorffii), 5'ss of exon 3
AGACACTCTCTATGATCACAAAGGCCTTCATTACTTCAACAACTGCTCTATTCAAGGTTCTGTTCTTTTCATCTTCGGTTCCGCCAGGTCCCTTTACGAGgtcttctttcgtttcctacctttttttttcttctttttcgtgtctggacttgaccaaggtccaaacatgccgttttttagcacaacaatatagcccaata
||||||||||||||||||||| ||||  |||||||||||    || |   | |||||    ||   ||||||||| || |  |  || ||||| ||| | ||      |     || | || |   |       |     | | || |                                                    
AGACACTCTCTATGATCACAAGGGCCGGCATTACTTCAAGCGATGTTTCGTGCAAGGAAGCGTGGATTTCATCTTTGGCTATGGAAGATCCCTCTACAAAgta---cgtaaaaaccaaactctccatcaaaagatcacaatctttgcag---------------------------------------------------