Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAGCAGCGTCCACTCCATGAGATCCTCTCCCAATTCAACTCCGCAATCCCTTCCTCTCGCCATTTCACTCTCTCTTCCTATCTCCTCATCCTATTGCAGgttcgtaacatttttttctttttagggtttttcattccccactcgcaattcaacttctaggtttttctatcacaaatcttgtaccttagatactgattct...

Basic information

species Glycine max
transcript GLYMA02G00750.2
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213590906|gb|DB973717.1|DB973717
EST:     CTTCCTCTCGCCATTTCACTCTCTCTTCCTATCTCCTCATCCTATTGCAG                         GACAATAAGGTGCTCAGCACCACTGAGCGGTTAATAGCTTTTGCTCTGCTA
genomic: CTTCCTCTCGCCATTTCACTCTCTCTTCCTATCTCCTCATCCTATTGCAGgttcgtaaca ... ttgtgggcagGACAATAAGGTGCTCAGCACCACTGAGCGGTTAATAGCTTTTGCTCTGCTA
EST: gi|22541847|gb|BU091690.1|BU091690
EST:     CTTCCTCTCGCCATTTCACTCTCTCTTCCTATCTCCTCATCCTATTGCAG                         GACAATAAGGTGCTCAGCACCACTGAGCGGTTAATAGCTTTTGCTCTGCTA
genomic: CTTCCTCTCGCCATTTCACTCTCTCTTCCTATCTCCTCATCCTATTGCAGgttcgtaaca ... ttgtgggcagGACAATAAGGTGCTCAGCACCACTGAGCGGTTAATAGCTTTTGCTCTGCTA
EST: gi|19347696|gb|BM892484.1|BM892484
EST:     CTTCCTCTCGCCATTTCACTCTCTCTTCCTATCTCCTCATCCTATTGCAG                         GACAATAAGGTGCTCAGCACCACTGAGCGGTTAATAGCTTTTGCTCTGCTA
genomic: CTTCCTCTCGCCATTTCACTCTCTCTTCCTATCTCCTCATCCTATTGCAGgttcgtaaca ... ttgtgggcagGACAATAAGGTGCTCAGCACCACTGAGCGGTTAATAGCTTTTGCTCTGCTA
EST: gi|193383760|gb|FK346867.1|FK346867
EST:     CTTCCTCTCGCCATTTCACTCTCTCTTCCTATCTCCTCATCCTATTGCAG                         GACAATAAGGTGCTCAGCACCACTGAGCGGTTAATAGCTTTTGCTCTGCTA
genomic: CTTCCTCTCGCCATTTCACTCTCTCTTCCTATCTCCTCATCCTATTGCAGgttcgtaaca ... ttgtgggcagGACAATAAGGTGCTCAGCACCACTGAGCGGTTAATAGCTTTTGCTCTGCTA
EST: gi|6566941|gb|AW234572.1|AW234572
EST:     CTTCCTCTCGCCATTTCACTCTCTCTTCCTATCTCCTCATCCTATTGCAG                         GACAATAAGGTGCTCAGCACCACTGAGCGGTTAATAGCTTTTGCTCTGCTA
genomic: CTTCCTCTCGCCATTTCACTCTCTCTTCCTATCTCCTCATCCTATTGCAGgttcgtaaca ... ttgtgggcagGACAATAAGGTGCTCAGCACCACTGAGCGGTTAATAGCTTTTGCTCTGCTA
EST: gi|193410737|gb|FK375898.1|FK375898
EST:     CTCGCCATTTCATTCTCTCTTCCTATCTCCTCATCCTATTGCAG                         GACAATAAGGTGCTCAGCACCACTGAGCGGTTAATAGCTTTTGCTCTGCTA
genomic: CTCGCCATTTCACTCTCTCTTCCTATCTCCTCATCCTATTGCAGgttcgtaaca ... ttgtgggcagGACAATAAGGTGCTCAGCACCACTGAGCGGTTAATAGCTTTTGCTCTGCTA
EST: gi|254328397|gb|GR835362.1|GR835362
EST:     CTTCCTCTCGCCATTTCACTCTCTCTTCCTATCTCCTCATCCTATTGCAG                         GACAATAAGGTGCTCAGCACCACTGAGCGGTTAATAGCTTTTGCTCTGCTA
genomic: CTTCCTCTCGCCATTTCACTCTCTCTTCCTATCTCCTCATCCTATTGCAGgttcgtaaca ... ttgtgggcagGACAATAAGGTGCTCAGCACCACTGAGCGGTTAATAGCTTTTGCTCTGCTA
EST: gi|4291000|gb|AI437557.1|AI437557
EST:     CTTCCTCTCGCCATTTCACTCTCTCTTCCTATCTCCTCATCCTATTGCAG                         GACAATAAGGTGCTCAGCACCACTGAGCGGTTAATAGCTTTTGCTCTGCTA
genomic: CTTCCTCTCGCCATTTCACTCTCTCTTCCTATCTCCTCATCCTATTGCAGgttcgtaaca ... ttgtgggcagGACAATAAGGTGCTCAGCACCACTGAGCGGTTAATAGCTTTTGCTCTGCTA
EST: gi|208218769|gb|GE017081.1|GE017081
EST:     TATCTCCTCATCCTATTGCAG                         GACAATAAGGTGCTCAGCACCACTGAGCGGTTAATAGCTTTTGCTCTGCTA
genomic: TATCTCCTCATCCTATTGCAGgttcgtaaca ... ttgtgggcagGACAATAAGGTGCTCAGCACCACTGAGCGGTTAATAGCTTTTGCTCTGCTA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGAGCAGCGTCCACTCCATGAGATCCTCTCCCAATTCAACTCCGCAATCCCTTCCTCTCGCCATTTCACTCTCTCTTCCTATCTCCTCATCCTATTGCAGgttcgtaacatttttttctttttagggtttttcattccccactcgcaattcaacttctaggtttttctatcacaaatcttgtaccttagatactgattct

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC