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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTTATAATTGCAGCGTCGACAAAAACCCTAACTCCTAACCTTTTTTTCTTCCTTTCACCTCTTCAGCAGTCGTTACAGAGACTCCATAACCCGAAAATGgtgagttccctcactttctcaacccttgcgtgtttctgcatctggattttcttcttctgataaaaaaatttttttttttccgtctttgatctgtgttgcag

Basic information

species Glycine max
transcript GLYMA02G00680.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151408686|gb|EV278494.1|EV278494
EST:     TCCTTTCACCTCTTCAGCAGTCGTTACAGAGACTCCATAACCCGAAAATG                         CCTTTCAAGAGGTACGTTGAGATTGGAAGGGTTGCTCAGATCAACTATGGC
genomic: TCCTTTCACCTCTTCAGCAGTCGTTACAGAGACTCCATAACCCGAAAATGgtgagttccc ... tgtgttgcagCCTTTCAAGAGGTACGTTGAGATTGGAAGGGTTGCTCAGATCAACTATGGC
EST: gi|31474545|gb|CD416573.1|CD416573
EST:     CACCTCTTCAGCAGTCGTTACAGAGACTCCATAACCCGAAAATG                         CCTTTCAAGAGGTACGTTGAGATTGGAAGGGTTGCTCAGATCAACTATGGC
genomic: CACCTCTTCAGCAGTCGTTACAGAGACTCCATAACCCGAAAATGgtgagttccc ... tgtgttgcagCCTTTCAAGAGGTACGTTGAGATTGGAAGGGTTGCTCAGATCAACTATGGC
EST: gi|7639446|gb|AW733769.1|AW733769
EST:     TCTTCAGCAGTCGTTACAGAGACTCCATAACCCGAAAATG                         CCTTTCAAGAGGTACGTTGAGATTGGAAGGGTTGCTCAGATCAACTATGGC
genomic: TCTTCAGCAGTCGTTACAGAGACTCCATAACCCGAAAATGgtgagttccc ... tgtgttgcagCCTTTCAAGAGGTACGTTGAGATTGGAAGGGTTGCTCAGATCAACTATGGC
EST: gi|41146190|gb|CK606401.1|CK606401
EST:     TCCTTTCACCTCTTCAGCAGTCGTTACAGAGACTCCATAACCCGAAAATG                         CCTTTCAAGAGGTACGTTGAGATTGGAAGGGTTGCTCAGATCGACTATGGC
genomic: TCCTTTCACCTCTTCAGCAGTCGTTACAGAGACTCCATAACCCGAAAATGgtgagttccc ... tgtgttgcagCCTTTCAAGAGGTACGTTGAGATTGGAAGGGTTGCTCAGATCAACTATGGC
EST: gi|192299057|gb|FG990385.1|FG990385
EST:     TCCTTTCACCTCTTCAGCAGTCGTTACAGAGACTCCATAACCCGAAAATG                         CCTTTCAAGAGGTACGTTGAGATTGGAAGGGTTGCTCAGATCAACTATGGC
genomic: TCCTTTCACCTCTTCAGCAGTCGTTACAGAGACTCCATAACCCGAAAATGgtgagttccc ... tgtgttgcagCCTTTCAAGAGGTACGTTGAGATTGGAAGGGTTGCTCAGATCAACTATGGC
EST: gi|31309420|gb|CD394623.1|CD394623
EST:     TCGTTACAGAGACTCCATAACCCGAAAATG                         CCTTTCAAGAGGTACGTTGAGATTGGAAGGGTTGCTCAGATCAACTATGGC
genomic: TCGTTACAGAGACTCCATAACCCGAAAATGgtgagttccc ... tgtgttgcagCCTTTCAAGAGGTACGTTGAGATTGGAAGGGTTGCTCAGATCAACTATGGC
EST: gi|192326906|gb|FK019198.1|FK019198
EST:     TCCTTTCACCTCTTCAGCAGTCGTTACAGAGACTCCATAACCCGAAAATG                         CCTTTCAAGAGGTACGTTGAGATTGGAAGGGTTGCTCAGATCAACTATGGC
genomic: TCCTTTCACCTCTTCAGCAGTCGTTACAGAGACTCCATAACCCGAAAATGgtgagttccc ... tgtgttgcagCCTTTCAAGAGGTACGTTGAGATTGGAAGGGTTGCTCAGATCAACTATGGC
EST: gi|192310170|gb|FK000678.1|FK000678
EST:     AGCAGTCGTTACAGAGACTCCATAACCCGAAAATG                         CCTTTCAAGAGGTACGTTGAGATTGGAAGGGTTGCTCAGATCAACTATGGC
genomic: AGCAGTCGTTACAGAGACTCCATAACCCGAAAATGgtgagttccc ... tgtgttgcagCCTTTCAAGAGGTACGTTGAGATTGGAAGGGTTGCTCAGATCAACTATGGC
EST: gi|58023951|gb|CX710692.1|CX710692
EST:     CTTCAGCAGTCGTTACAGAGACTCCATAACCCGAAAATG                         CCTTTCAAGAGGTACGTTGAGATTGGAAGGGTTGCTCAGATCAACTATGGC
genomic: CTTCAGCAGTCGTTACAGAGACTCCATAACCCGAAAATGgtgagttccc ... tgtgttgcagCCTTTCAAGAGGTACGTTGAGATTGGAAGGGTTGCTCAGATCAACTATGGC
EST: gi|209701605|gb|BW655866.1|BW655866
EST:     TCCTTTCACCTCTTCAGCAGTCGTTACAGAGACTCCATAACCCGAAAATG                         CCTTTCAAGAGGTACGTTGAGATTGGAAGGGTTGCTCAGATCAACTATGGC
genomic: TCCTTTCACCTCTTCAGCAGTCGTTACAGAGACTCCATAACCCGAAAATGgtgagttccc ... tgtgttgcagCCTTTCAAGAGGTACGTTGAGATTGGAAGGGTTGCTCAGATCAACTATGGC
EST: gi|31461690|gb|CD403718.1|CD403718
EST:     CACCTCTTCAGCAGTCGTTACAGAGACTCCATAACCCGAAAATG                         CCTTTCAAGAGGTACGTTGAGATGGGAAGGGTGGCTCAGATCAACTATGGC
genomic: CACCTCTTCAGCAGTCGTTACAGAGACTCCATAACCCGAAAATGgtgagttccc ... tgtgttgcagCCTTTCAAGAGGTACGTTGAGATTGGAAGGGTTGCTCAGATCAACTATGGC
EST: gi|298169651|gb|HO021011.1|HO021011
EST:     TCCTTTCACCTCTTCAGCAGTCGTTACAGAGACTCCATAACCCGAAAATG                         CCTTTCAAGAGGTACGTTGAGATTGGAAGGGTTGCTCAGATCAACTATGGC
genomic: TCCTTTCACCTCTTCAGCAGTCGTTACAGAGACTCCATAACCCGAAAATGgtgagttccc ... tgtgttgcagCCTTTCAAGAGGTACGTTGAGATTGGAAGGGTTGCTCAGATCAACTATGGC
EST: gi|254348775|gb|GR852454.1|GR852454
EST:     TCCTTTCACCTCTTCAGCAGTCGTTACAGAGACTCCATAACCCGAAAATG                         CCTTTCAAGAGGTACGTTGAGATTGGAAGGGTTGCTCAGATCAACTATGGC
genomic: TCCTTTCACCTCTTCAGCAGTCGTTACAGAGACTCCATAACCCGAAAATGgtgagttccc ... tgtgttgcagCCTTTCAAGAGGTACGTTGAGATTGGAAGGGTTGCTCAGATCAACTATGGC
EST: gi|192310169|gb|FK000677.1|FK000677
EST:     TCCTTTCACCTCTTCAGCAGTCGTTACAGAGACTCCATAACCCGAAAATG                         CCTTTCAAGAGGTACGTTGAGATTGGAAGGGTTGCTCAGATCAACTATGGC
genomic: TCCTTTCACCTCTTCAGCAGTCGTTACAGAGACTCCATAACCCGAAAATGgtgagttccc ... tgtgttgcagCCTTTCAAGAGGTACGTTGAGATTGGAAGGGTTGCTCAGATCAACTATGGC
EST: gi|209701606|gb|BW655867.1|BW655867
EST:     TCCTTTCACCTCTTCAGCAGTCGTTACAGAGACTCCATAACCCGAAAATG                         CCTTTCAAGAGGTACGTTGAGATTGGAAGGGTTGCTCAGATCAACTATGGC
genomic: TCCTTTCACCTCTTCAGCAGTCGTTACAGAGACTCCATAACCCGAAAATGgtgagttccc ... tgtgttgcagCCTTTCAAGAGGTACGTTGAGATTGGAAGGGTTGCTCAGATCAACTATGGC