Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCACTGTCACCATCATCAACCACAACACCTCCACCAACAACAACGCTAACTGCTTCTCTACGCTCCTTCTCCCTTCTCTCTCTCAACTTCCAGATTCAAGgtaccctttttcctgttctttcaatccgaatttctacttgtactactagtgttgctgcttgatcagttttgactttgattcataattttcatttattttt...

Basic information

species Glycine max
transcript GLYMA02G00580.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193560491|gb|FK519756.1|FK519756
EST:     TGCTTCTCTACGCTCCTTCTCCCTTCTCTCTCTCAACTTCCAGATTCAAG                         AAGTAGCAGTTACTGTGCCTTTGGTTCTTCTGGTGAACAGAAGTGCCTTGA
genomic: TGCTTCTCTACGCTCCTTCTCCCTTCTCTCTCTCAACTTCCAGATTCAAGgtaccctttt ... gtttgaacagAAGTAGCAGTTACTGTGCCTTTGGTTCTTCTGGTGAACAGAAGTGCCTTGA
EST: gi|209722073|gb|BW651192.1|BW651192
EST:     TGCTTCTCTACGCTCCTTCTCCCTTCTCTCTCTCAACTTCCAGATTCAAG                         AAGTAGCAGTTACTGTGCCTTTGGTTCTTCTGGTGAACAGAAGTGCCTTGA
genomic: TGCTTCTCTACGCTCCTTCTCCCTTCTCTCTCTCAACTTCCAGATTCAAGgtaccctttt ... gtttgaacagAAGTAGCAGTTACTGTGCCTTTGGTTCTTCTGGTGAACAGAAGTGCCTTGA