Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGCCGCACCTTGATTCAGAGCAGAGCGACCTTGAAGAGCTATGGCTGTCGGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGCgttagtgcccattctcttcacttttttttttttttttttttatttctattgtcgtattctccattttaactctgatttgtttcttcttcttcttccgtgaatccacag

Basic information

species Glycine max
transcript GLYMA01G44700.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G44700.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G030915_T08 (Zea mays), 5'ss of exon 1
CAGCCGCACCTTGATTCAG--AGCAGAGCGACCTTGAAGAGCTATGGCTGTCGGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGCgttagtgcccattctcttcacttttttttttttttttttttatttctattgtcgtattctccattttaactctgatttgtttcttcttcttcttccgtgaatccacag------
   |||  |  |    ||   | ||| ||| |   |  || | ||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||  |||||||   | | |   | |  |     || ||    | ||| ||   | |     ||      |||| |  |   |  |    |    |  || ||| | | |          
-TACCGTCCGATACCCCAAGCACCAGCGCGGCGGCGGCGA-CCATGGCTGTCGGAAAGAACAAGAGGATCTCCAAGGGAAAGAAGGGTGGCAAGAAAAAGACgttagtttgcttgcctgttatatcccagttcttcagatcttacttgggtcgattgctttctttctttatccgttgctgatgcggttgcgtggttgcgttacttcttttatgcag

upper sequence: GLYMA01G44700.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G030915_T01 (Zea mays), 5'ss of exon 2
CAGCCGCACCTTGATTCAGAGCAGAGCGACCTTGAAGAGCTATGGCTGTCGGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGCgttagtgcccattctcttcacttttttttttttttttttttatttctattgtcgtattctccattttaactctgatttgtttcttcttcttcttccgtgaatccacag------
                         ||| |   ||    | ||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||  |||||||   | | |   | |  |     || ||    | ||| ||   | |     ||      |||| |  |   |  |    |    |  || ||| | | |          
-------------------------GCGGCGGCGA----CCATGGCTGTCGGAAAGAACAAGAGGATCTCCAAGGGAAAGAAGGGTGGCAAGAAAAAGACgttagtttgcttgcctgttatatcccagttcttcagatcttacttgggtcgattgctttctttctttatccgttgctgatgcggttgcgtggttgcgttacttcttttatgcag

upper sequence: GLYMA01G44700.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G145258_T01 (Zea mays), 5'ss of exon 1
CAGCCGCACCTTGATTCAGAGCAGAGCGACCTTGAAGAGCTATGGCTGTCGGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGCgttagtgcccattctcttcactttttttttttt----ttttttttatttctattgtcgtattctccattttaactctgatttgtttct-tcttcttcttccgtgaatc-cacag
   || ||        |   || | | |  |        | ||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||  |||||||   | | |   | |  |     || ||    | ||  || | || ||||   | ||      |      |||||  | |||| |  |    || | | | |    |||
AGACCCCAAGCACCAGCGCGGCGGCGGGGGCGGCGGCGACCATGGCTGTCGGAAAGAACAAGAGGATCTCCAAGGGAAAGAAGGGTGGCAAGAAAAAGACgttagtttgcttgcctgttatatcccagttcttcagatcttgcttgtgtcgattgctttttttctttatccgttgctgatgcggttctgtggttgcgttacatcatttatgcag

upper sequence: GLYMA01G44700.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G030915_T01 (Zea mays), 5'ss of exon 1
--------------------------------------------------------------CAGCCGCACCTTGATTCAGAGCAG-AGCGACCTTGAAGA--GCTATGGCTGTCGGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGCgttagtgcccattctcttcacttttttttttttttttttttatttctattgtcgtattctccattttaactctgatttgtttcttcttcttcttccgtgaatccacag
                                                              | |   | ||  |   ||| || |  ||| |   |  |    | ||||||||||| ||||| |||||||| |||||||||||||||||||||||||| ||  |||||||   | | |   | |  |     || ||                                                                           
TAGTAGTCCGCTCTGCCTCCGAAGTGCTTTCTCCCGCAGAGCAGCCGACAACTCTCTACCGTCCGAGACCCCAAGCACCAGCGCGGCGGCGGCGgcggcggcgaccatggctgtcgggaagaacaagaggatctccaagggaaagaagggtggcaagaaaaagacgttagtttgcttgcctgttatatcccagttcttca-------------------------------------------------------------------------

upper sequence: GLYMA01G44700.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G030915_T04 (Zea mays), 5'ss of exon 1
CAGCCGCACCTTGATTCAGAGCAG-AGCGACCTTGAAG--AGCTATGGCTGTCGGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGCgttagtgcccattctcttcacttttttttttttttttttttatttctattgtcgtattctccattttaactctgatttgtttcttcttcttcttccgtgaatccacag
      | ||  |   ||| || |  ||| |   |  |    | ||||||||||| ||||| |||||||| |||||||||||||||||||||||||| ||  |||||||   | | |   | |  |     || ||    | |   ||   | |     ||      |||| |  |   |  |    |  | |  || ||  |        
---AGACCCCAAGCACCAGCGCGGCGGCGGCGGCGGCGGCGACCATGGCTGTCGGGAAGAACAAGAGGATCTCCAAGGGAAAGAAGGGTGGCAAGAAAAAGACgttagtttgcttgcctgttatatcccagttcttcagatctagcttgggtcgattgctttctttctttatccgttgctgatgctgttgtgtggttgcgata--------

upper sequence: GLYMA01G44700.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G030915_T03 (Zea mays), 5'ss of exon 1
CAGCCGCACCTTGATTCAGAGCAG-AGCGACCTTGAAG--AGCTATGGCTGTCGGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGCgttagtgcccattctcttcacttttttttttttttttttttatttctattgtcgtattctccattttaactctgatttgtttcttcttcttcttccgtgaatccacag------
      | ||  |   ||| || |  ||| |   |  |    | ||||||||||| ||||| |||||||| |||||||||||||||||||||||||| ||  |||||||   | | |   | |  |     || ||    | |   ||   | |     ||      |||| |  |   |  |    |  | |  || ||  | | |          
---AGACCCCAAGCACCAGCGCGGCGGCGGCGGCGGCGGCGACCATGGCTGTCGGGAAGAACAAGAGGATCTCCAAGGGAAAGAAGGGTGGCAAGAAAAAGACgttagtttgcttgcctgttatatcccagttcttcagatctagcttgggtcgattgctttctttctttatccgttgctgatgctgttgtgtggttgcgatacttcttttatgcag

upper sequence: GLYMA01G44700.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G013457_T01 (Zea mays), 5'ss of exon 1
CAG-CCGCACCTTGATTCAGAGCAGAGCGACCTTGAAGAGCTATGGCTGTCGGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGCgttagtgcccattc-tcttcacttttttttttttttttttttatttctattgtcgtattctccattttaactctgatttgtttcttcttct-tcttccgtgaatcc-acag
 || | | |||   |      ||   ||| |   |   | | ||||| ||||| ||||| |||||||| |||||||||||||||||||| ||||| ||  ||| |||   | | | | |||      || ||    | | | |   || ||||     ||        |    |||||  | || |   ||| | |||| |   ||  ||||
TAGTCTGTACCCCAAGCACCGGCGCGGCGGCGGCGGCTA-CCATGGCAGTCGGGAAGAACAAGAGGATCTCCAAGGGAAAGAAGGGTGGTAAGAAAAAGACgtaagtttgcttgcatgttcttcccgttcttcacatctatctcggtcaattgcttcgtttctggagcttctgctgatgcggttgtgtgtctgtgttccttttgtcttacag

upper sequence: GLYMA01G44700.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv05s0020g03900.t01 (Vitis vinifera), 5'ss of exon 2
CAGCCGCACCTTGATTCAGAGCAGAGCGACCTTGAAGAGCTATGGCTGTCGGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGCgttagtgcc------cattctcttcacttttttttttttttttttttatttctattgtcgtattctccattttaactctgatttgtttcttcttcttcttccgtgaatccacag
                                                     ||||| |||||||||||||||||||| ||||| ||||||||||| |||| |||||       ||   |  |||  ||||   ||    || |  | |||| |||    ||| | |||  | | | | ||   |                            
----------------------------------------------------GAAGAACAAGAGGATTTCCAAGGGAAAAAAGGGAGGCAAGAAGAAGGCgtgagtgcaatatcacaacttaatcaaattttgaattggccttatcaacttctgttgcttgatttttcatcctga-tataatcaatgcag------------------------

upper sequence: GLYMA01G44700.1 (Glycine max), 5'ss of exon 1
lower sequence: PP1S17_306V6.1 (Physcomitrella patens), 5'ss of exon 1
CAGCCGCACCTTGATTCAGAGCAGA-GCGACCTTGA--AGAGCTATGGCTGTCGGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGCgttagtgcccattctcttcacttttttttttttttttttttatttctattgtcgtattctccattttaactctgatttgtttcttcttcttcttccgtgaatc---cacag
   ||   |      ||| | |    || ||  ||     ||| ||||||||||| ||||| ||| |||| |||||||| |||||||||||||||||||||  || |  | ||  |  ||        | |||       |   || | || | || | || |     |||     | ||| |     |||        | || |      |||
---CCCTGCTCATCATCATATCTCTTGCTACTCTGTCTGCAGCCATGGCTGTCGGGAAGAACAAGCGGATCTCCAAGGGGAAGAAGGGTGGCAAGAAGAAAATgt-aacgtccgctggctgtctgagctctttacgacagtcgaatgtgtaatttcat-ttttgtgagttattgagggtttctgctaacttgacgacgtgggagtggtgtgcag

upper sequence: GLYMA01G44700.1 (Glycine max), 5'ss of exon 1
lower sequence: PP1S174_49V6.1 (Physcomitrella patens), 5'ss of exon 1
CAGCCGCACCTTGATTCAGAGCAGAGCGACCTTGAAGAGCTATGGCTGTCGGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGCgttagtgcccattctct-tcacttttttttttttttttttt-------tatttctattgtcgtattctccattttaactctgatttgtttcttcttcttcttccgtgaatccacag----------------------------------------
                                         ||||| ||||| ||||| ||| | ||||||||||| |||||||||||||||||||||  ||  |  |||||  ||| || || | | | | | | |   |       ||| ||| ||    ||| | ||    | ||  || |  |||| ||    || |   |||  |     |                                        
-----------------------------------------ATGGCGGTCGGGAAGAACAAGCGCATTTCCAAGGGGAAGAAGGGTGGCAAGAAGAAAATgtacgctcccataatctctctctctctctctctctctccctcgctcgctatctctctttctctatcccccccactcacagtggtgcgtttattagggttttgatgtgtttgtgaggatttgagatgacatggcgatatcttctgagtcctacgcag

upper sequence: GLYMA01G44700.1 (Glycine max), 5'ss of exon 1
lower sequence: PP1S179_15V6.1 (Physcomitrella patens), 5'ss of exon 1
--CAGCCGCACCTTGATTCAGAGCAGAGCGACCTTGAAGAGCTATGGCTGTCGGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGCgt-tagtgcccattctcttcacttttttttttttttttttttatttctattgtcgtatt--ctccattttaactctga---tttgtttcttcttcttcttccgtgaatccacag---
  | ||| | |  || | | |  | |  |   | |    | | ||||| ||||| ||||| ||| |||||||||||||||||||||||||||||||||||  ||  |    || | |  | | ||   ||   |    |     | || ||   | || ||   ||||  |   |  |||   |||| |    | |     |   ||| ||    |   
CCCTGCCTCCCACTGCTGCCG--CTGCTCCGTCCTCCGCAACAATGGCGGTCGGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAATgtacaccttccctaccttgccctccattacctccagtgccgcacttgtaggtttgtgttgcttccaaatgttccttgagcatttggtctaacatggagatgtttgagtcttgtgcag

upper sequence: GLYMA01G44700.1 (Glycine max), 5'ss of exon 1
lower sequence: PP1S219_50V6.1 (Physcomitrella patens), 5'ss of exon 1
--CAGC-CGCACCTTGATTCAGAGCAGAGCGACCTTGAAGAGCTATGGCTGTCGGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGCgt---tagtgcccattctcttc-acttttttttttttttttttttatttcta-------ttgtcgtattctccattttaactc-tgatttgtttc-------ttcttcttcttccgtga-atccacag--------------------------------------
  |||| |||||   | ||    || |      |   |  ||| ||||| ||||| ||||| ||| | ||||||||||| |||||||| ||||||||||||  ||   |  | ||  | || ||| ||| |   ||      |    |   |||        ||   ||| |  |  | || | |  || |||| ||        ||  | | |||  |||  ||   | |                                      
TTCAGCTCGCACGGAGCTTGTTTGCTGCTTCGAC---AGCAGCCATGGCCGTCGGCAAGAACAAGCGTATTTCCAAGGGGAAGAAGGGAGGCAAGAAGAAAATgtacttctttccagtacttttctactgtgaattcacggctccactgcgtctgccaagtgtttgtgtactagctgtcttgagtgatggtttggtttctagggtttagtgtgcttgtgtggtatatgcggaggttctaactagagcgacgatgatttttgcactgcag

upper sequence: GLYMA01G44700.1 (Glycine max), 5'ss of exon 1
lower sequence: PP1S80_120V6.1 (Physcomitrella patens), 5'ss of exon 1
CAGCCGCACCTTGATTCAGAGCAGAGCGACCTTGAAGAGCTATGGCTGTCGGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGCgttagtgcccattctcttcactttttttt-----ttttttttttttatttctattgtcgtattctccattttaactctgatttgtttcttcttcttcttccgtgaatccacag--------------------
                                       | ||||| ||||| ||||||||  | || || |||||||||||||| ||||||||||||  || || || |    ||| |   | |||       |   |  ||     | ||  ||   |  | |   |||    |  ||  | | | ||  | | |   | |  |  |  ||                    
---------------------------------------CCATGGCGGTCGGCAAGAATAAACGTATCTCGAAGGGAAAGAAGGGAGGCAAGAAGAAAATgt-agcgctctccttctccttctctttacaggaatggctaattcgctgtcctgctgcgctggtttgagtttaggtttcgaggtttgtgtttgtttccacgcattgacgcggaggacggtgggatgtaatgcag

upper sequence: GLYMA01G44700.1 (Glycine max), 5'ss of exon 1
lower sequence: PP1S92_47V6.2 (Physcomitrella patens), 5'ss of exon 1
CAGCCGCACCTTGATTCAGAGCAGAGCGACCTTGAAGAGCTATGGCTGTCGGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGCgttagtgcccattctcttcacttttttttttttttttttttatttctattgtcgtattctccattttaactctgatttgtttcttcttcttcttccgtgaatccacag
| | |   ||           | |      | |    ||| ||||| ||||| ||||| ||| ||||||||||||| || ||||| || |||||||||  ||  ||    ||||         || |    |||||  |   ||| | | |  ||  |   ||||| ||  |||   | ||  || || || | |      | ||   
CCGTCTTGCCAGCCGCTGCTTCTGCCTCGTCCTCTGCAGCCATGGCGGTCGGGAAGAACAAGCGGATTTCCAAGGGGAAAAAGGGCGGGAAGAAGAAAATgtacgtctaaattcaacatggcgttgtgaggtttttggtgggtttttgtgg--gttgtgagcatttaaaa-ctgtcatattgattttttttgtgcgtcttgtgcag--

upper sequence: GLYMA01G44700.1 (Glycine max), 5'ss of exon 1
lower sequence: EFJ09763 (Selaginella moellendorffii), 5'ss of exon 2
CAGCCGCACCTTGATTCAGAGCAGAGCGACCTTGAAGAGCTATGGCTGTCGGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGCgttagtgcccattctcttcacttttttttttttttttttttatttctattgtcgtattctccattttaactctgatttgtttcttcttcttcttccgtgaatccacag
                                                     ||||| ||| |||||||||||||||||||||| ||||||||||||  || ||||      | |  |  |||   |  ||  ||| ||  || ||                                                             
----------------------------------------------------GAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGAGGCAAGAAGAAAATgtaagtgtttgg-cgcagcgttttgcctgcttgatttcttctttcctcag----------------------------------------------------------

upper sequence: GLYMA01G44700.1 (Glycine max), 5'ss of exon 1
lower sequence: EFJ11647 (Selaginella moellendorffii), 5'ss of exon 2
CAGCCGCACCTTGATTCAGAGCAGAGCGACCTTGAAGAGCTATGGCTGTCGGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGCgttagtgcccattctcttcactttttttt--ttttttttttttatttctattgtcgtattctccattttaactctgatttgtttcttcttcttcttccgtgaatccacag
                                                     ||||| ||| ||||||||||||||||||| || ||||||||||||  || ||||      | |  |  |||  ||   |||| ||  || ||||||  ||||||                                                     
----------------------------------------------------GAAGAACAAGCGGATTTCCAAGGGAAAGAAAGGAGGCAAGAAGAAAATgtaagtgtttgg-cgcagcgttttgcttcgattttattgcttgatttcttctgtcgttag--------------------------------------------------

upper sequence: GLYMA01G44700.1 (Glycine max), 5'ss of exon 1
lower sequence: EFJ09804 (Selaginella moellendorffii), 5'ss of exon 2
CAGCCGCACCTTGATTCAGAGCAGAGCGACCTTGAAGAGCTATGGCTGTCGGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGCgttagtgcccattctcttcactttttttt--ttttttttttttatttctattgtcgtattctccattttaactctgatttgtttcttcttcttcttccgtgaatccacag
                                                     ||||| ||| |||||||||||||||||||||| ||||||||||||  || ||||      | |  |  |||  ||   |||| ||  || ||||||  ||||||                                                     
----------------------------------------------------GAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGAGGCAAGAAGAAAATgtaagtgttt-cgcgcagcgttttgcttcgattttattgcttgatttcttctgtcgttag--------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19453512|gb|BM954922.1|BM954922
EST:     GGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGC                         CGCTGATCCCTTTGCCAAGAAGGACTGGTACGATATCAAGGCCCCTTCCGT
genomic: GGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGCgttagtgccc ... gaatccacagCGCTGATCCCTTTGCCAAGAAGGACTGGTACGATATCAAGGCCCCTTCCGT
EST: gi|254343531|gb|GR857287.1|GR857287
EST:     GGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGC                         CGCTGATCCCTTTGCCAAGAAGGACTGGTACGATATCAAGGCCCCTTCCGT
genomic: GGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGCgttagtgccc ... gaatccacagCGCTGATCCCTTTGCCAAGAAGGACTGGTACGATATCAAGGCCCCTTCCGT
EST: gi|38193400|gb|CF922606.1|CF922606
EST:     GGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGC                         CGCTGATCCCTTTGCCAAGAAGGACTGGTACGATATCAAGGCCCCTTCCGT
genomic: GGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGCgttagtgccc ... gaatccacagCGCTGATCCCTTTGCCAAGAAGGACTGGTACGATATCAAGGCCCCTTCCGT
EST: gi|298168184|gb|HO013447.1|HO013447
EST:     GGAAAGAATAAGAGGTTTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGC                         CGCTGATCCCTTTGCCAAGAAGGACTGGTACGATATCAAGGCCCCTTCCGT
genomic: GGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGCgttagtgccc ... gaatccacagCGCTGATCCCTTTGCCAAGAAGGACTGGTACGATATCAAGGCCCCTTCCGT
EST: gi|193637907|gb|FK585751.1|FK585751
EST:     GGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGC                         CGCTGATCCCTTTGCCAAGAAGGACTGGTACGATATCAAGGCCCCTTCCGT
genomic: GGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGCgttagtgccc ... gaatccacagCGCTGATCCCTTTGCCAAGAAGGACTGGTACGATATCAAGGCCCCTTCCGT
EST: gi|4397560|gb|AI496557.1|AI496557
EST:     GGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGC                         CGCTGATCCCTTTGCCAAGAAGGACTGGTACGATATCAAGGCCCCTTCCGT
genomic: GGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGCgttagtgccc ... gaatccacagCGCTGATCCCTTTGCCAAGAAGGACTGGTACGATATCAAGGCCCCTTCCGT
EST: gi|5058165|gb|AI736641.1|AI736641
EST:     GGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGC                         CGCTGATCCCTTTGCCAAGAAGGACTGGTACGATATCAAGGCCCCTTCCGT
genomic: GGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGCgttagtgccc ... gaatccacagCGCTGATCCCTTTGCCAAGAAGGACTGGTACGATATCAAGGCCCCTTCCGT
EST: gi|7232533|gb|AW567888.1|AW567888
EST:     GGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGC                         CGCTGATCCCTTTGCCAAGAAGGACTGGTACGATATCAAGGCCCCTTCCGT
genomic: GGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGCgttagtgccc ... gaatccacagCGCTGATCCCTTTGCCAAGAAGGACTGGTACGATATCAAGGCCCCTTCCGT
EST: gi|16348775|gb|BI974370.1|BI974370
EST:     GGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGC                         CGCTGATCCCTTTGCCAAGAAGGACTGGTACGATATCAAGGCCCCTTCCGT
genomic: GGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGCgttagtgccc ... gaatccacagCGCTGATCCCTTTGCCAAGAAGGACTGGTACGATATCAAGGCCCCTTCCGT
EST: gi|17153761|gb|BM143694.1|BM143694
EST:     GGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGC                         CGCTGATCCCTTTGCCAAGAAGGACTGGTACGATATCAAGGCCCCTTCCGT
genomic: GGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGCgttagtgccc ... gaatccacagCGCTGATCCCTTTGCCAAGAAGGACTGGTACGATATCAAGGCCCCTTCCGT
EST: gi|26060090|gb|CA803004.1|CA803004
EST:     GGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGC                         CGCTGATCCCTTTGCCAAGAAGGACTGGTACGATATCAAGGCCCCTTCCGT
genomic: GGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGCgttagtgccc ... gaatccacagCGCTGATCCCTTTGCCAAGAAGGACTGGTACGATATCAAGGCCCCTTCCGT
EST: gi|7233017|gb|AW568368.1|AW568368
EST:     GGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGC                         CGCTGATCCCTTTGCCAAGAAGGACTGGTACGATATCAAGGCCCCTTCCGT
genomic: GGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGCgttagtgccc ... gaatccacagCGCTGATCCCTTTGCCAAGAAGGACTGGTACGATATCAAGGCCCCTTCCGT
EST: gi|192332525|gb|FK025630.1|FK025630
EST:     GGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGC                         CGCTGATCCCTTTGCCAAGAAGGACTGGTACGATATCAAGGCCCCTTCCGT
genomic: GGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGCgttagtgccc ... gaatccacagCGCTGATCCCTTTGCCAAGAAGGACTGGTACGATATCAAGGCCCCTTCCGT
EST: gi|192328074|gb|FK020377.1|FK020377
EST:     GGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGC                         CGCTGATCCCTTTGCCAAGAAGGACTGGTACGATATCAAGGCCCCTTCCGT
genomic: GGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGCgttagtgccc ... gaatccacagCGCTGATCCCTTTGCCAAGAAGGACTGGTACGATATCAAGGCCCCTTCCGT
EST: gi|26058427|gb|CA801341.1|CA801341
EST:     GGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGC                         CGCTGATCCCTTTGCCAAGAAGGACTGGTACGATATCAAGGCCCCTTCCGT
genomic: GGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGCgttagtgccc ... gaatccacagCGCTGATCCCTTTGCCAAGAAGGACTGGTACGATATCAAGGCCCCTTCCGT
EST: gi|192332152|gb|FK024598.1|FK024598
EST:     GGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGC                         CGCTGATCCCTTTGCCAAGAAGGACTGGTACGATATCAAGGCCCCTTCCGT
genomic: GGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGCgttagtgccc ... gaatccacagCGCTGATCCCTTTGCCAAGAAGGACTGGTACGATATCAAGGCCCCTTCCGT
EST: gi|17400321|gb|BM177103.1|BM177103
EST:     GGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGC                         CGCTGATCCCTTTGCCAAGAAGGACTGGTACGATATCAAGGCCCCTTCCGT
genomic: GGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGCgttagtgccc ... gaatccacagCGCTGATCCCTTTGCCAAGAAGGACTGGTACGATATCAAGGCCCCTTCCGT
EST: gi|7685628|gb|AW756276.1|AW756276
EST:     GGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGC                         CGCTGATCCCTTTGCCAAGAAGGACTGGTACGATATCAAGGCCCCTTCCGT
genomic: GGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGCgttagtgccc ... gaatccacagCGCTGATCCCTTTGCCAAGAAGGACTGGTACGATATCAAGGCCCCTTCCGT
EST: gi|12690078|gb|BG156414.1|BG156414
EST:     GGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGC                         CGCTGATCCCTTTGCCAAGAAGGACTGGTACGATATCAAGGCCCCTTCCGT
genomic: GGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGCgttagtgccc ... gaatccacagCGCTGATCCCTTTGCCAAGAAGGACTGGTACGATATCAAGGCCCCTTCCGT
EST: gi|19269893|gb|BM886149.1|BM886149
EST:     GGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGC                         CGCTGATCCCTTTGCCAAGAAGGACTGGTACGATATCAAGGCCCCTTCCGT
genomic: GGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGCgttagtgccc ... gaatccacagCGCTGATCCCTTTGCCAAGAAGGACTGGTACGATATCAAGGCCCCTTCCGT
EST: gi|14126294|gb|BG790732.1|BG790732
EST:     GGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGC                         CGCTGATCCCTTTGCCAAGAAGGACTGGTACGATATCAAGGCCCCTTCCGT
genomic: GGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGCgttagtgccc ... gaatccacagCGCTGATCCCTTTGCCAAGAAGGACTGGTACGATATCAAGGCCCCTTCCGT
EST: gi|10847434|gb|BF070121.1|BF070121
EST:     GGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGC                         CGCTGATCCCTTTGCCAAGAAGGACTGGTACGATATCAAGGCCCCTTCCGT
genomic: GGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGCgttagtgccc ... gaatccacagCGCTGATCCCTTTGCCAAGAAGGACTGGTACGATATCAAGGCCCCTTCCGT
EST: gi|6502115|gb|AW203488.1|AW203488
EST:     GGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGC                         CGCTGATCCCTTTGCCAAGAAGGACTGGTACGATATCAAGGCCCCTTCCGT
genomic: GGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGCgttagtgccc ... gaatccacagCGCTGATCCCTTTGCCAAGAAGGACTGGTACGATATCAAGGCCCCTTCCGT
EST: gi|254337475|gb|GR845152.1|GR845152
EST:     GGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGC                         CGCTGATCCCTTTGCCAAGAAGGACTGGTACGATATCAAGGCCCCTTCCGT
genomic: GGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGCgttagtgccc ... gaatccacagCGCTGATCCCTTTGCCAAGAAGGACTGGTACGATATCAAGGCCCCTTCCGT
EST: gi|151393784|gb|EV263659.1|EV263659
EST:     GGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGC                         CGCTGATCCCTTTGCCAAGAAGGACTGGTACGATATCAAGGCCCCTTCCGT
genomic: GGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGCgttagtgccc ... gaatccacagCGCTGATCCCTTTGCCAAGAAGGACTGGTACGATATCAAGGCCCCTTCCGT
EST: gi|213599881|gb|DB973911.1|DB973911
EST:     GGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGC                         CGCTGATCCCTTTGCCAAGAAGGACTAGTACGATATCAAGGCCCCTTCCGT
genomic: GGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGCgttagtgccc ... gaatccacagCGCTGATCCCTTTGCCAAGAAGGACTGGTACGATATCAAGGCCCCTTCCGT
EST: gi|7588555|gb|AW704278.1|AW704278
EST:     GGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGC                         CGCTGATCCCTTTGCCAAGAAGGACTGGTACGATATCAAGGCCCCTTCCGT
genomic: GGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGCgttagtgccc ... gaatccacagCGCTGATCCCTTTGCCAAGAAGGACTGGTACGATATCAAGGCCCCTTCCGT
EST: gi|213616552|gb|DB967188.1|DB967188
EST:     GGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGC                         CGCTGATCCCTTTGCCAAGAAGGACTGGTACGATATCAAGGCCCCTTCCGT
genomic: GGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGCgttagtgccc ... gaatccacagCGCTGATCCCTTTGCCAAGAAGGACTGGTACGATATCAAGGCCCCTTCCGT
EST: gi|8669050|gb|BE190152.1|BE190152
EST:     GGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGC                         CGCTGATCCCTTTGCCAAGAAGGACTGGTACGATATCAAGGCCCCTTCCGT
genomic: GGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGCgttagtgccc ... gaatccacagCGCTGATCCCTTTGCCAAGAAGGACTGGTACGATATCAAGGCCCCTTCCGT
EST: gi|5058376|gb|AI736852.1|AI736852
EST:     GGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGC                         CGCTGATCCCTTTGCCAAGAAGGACTGGTACGATATCAAGGCCCCTTCCGT
genomic: GGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGCgttagtgccc ... gaatccacagCGCTGATCCCTTTGCCAAGAAGGACTGGTACGATATCAAGGCCCCTTCCGT
EST: gi|31561066|gb|CD486904.1|CD486904
EST:     GGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGC                         CGCTGATCCCTTTGCCAAGAAGGACTGGTACGATATCAAGGCCCCTTCCGT
genomic: GGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGCgttagtgccc ... gaatccacagCGCTGATCCCTTTGCCAAGAAGGACTGGTACGATATCAAGGCCCCTTCCGT
EST: gi|213611635|gb|DB969023.1|DB969023
EST:     GGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGC                         CGCTGATCCCTTTGCCAAGAAGGACTGGTACGATATCAAGGCCCCTTCCGT
genomic: GGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGCgttagtgccc ... gaatccacagCGCTGATCCCTTTGCCAAGAAGGACTGGTACGATATCAAGGCCCCTTCCGT
EST: gi|298181845|gb|HO026020.1|HO026020
EST:     GGGAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGC                         CGCTGATCCCTTTGCCAAGAAGGACTGGTACGATATCAAGGCCCCTTCCGT
genomic: GGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGCgttagtgccc ... gaatccacagCGCTGATCCCTTTGCCAAGAAGGACTGGTACGATATCAAGGCCCCTTCCGT
EST: gi|298182970|gb|HO028233.1|HO028233
EST:     GGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGC                         CGCTGATCCCTTTGCCAAGAAGGACTGGTACGATATCAAGGCCCCTTCCGT
genomic: GGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGCgttagtgccc ... gaatccacagCGCTGATCCCTTTGCCAAGAAGGACTGGTACGATATCAAGGCCCCTTCCGT
EST: gi|38192220|gb|CF921426.1|CF921426
EST:     GGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGTAAGAAGAAAGC                         CGCTGATCCCTTTGCCAAGAAAGACTGGTACGATATCAAGGCCCCTTCCCT
genomic: GGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGCgttagtgccc ... gaatccacagCGCTGATCCCTTTGCCAAGAAGGACTGGTACGATATCAAGGCCCCTTCCGT
EST: gi|13252116|gb|BG363019.1|BG363019
EST:     GGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGC                         CGCTGATCCCTTTGCCAAGAAGGACTGGTACGATATCAAGGCCCCTTCCTT
genomic: GGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGCgttagtgccc ... gaatccacagCGCTGATCCCTTTGCCAAGAAGGACTGGTACGATATCAAGGCCCCTTCCGT
EST: gi|9901452|gb|BE610420.1|BE610420
EST:     GGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGC                         CGCTGATCCCTTTGCCAAGAAGGACTGGTACGATATCAAGGCCCCTTCCGT
genomic: GGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGCgttagtgccc ... gaatccacagCGCTGATCCCTTTGCCAAGAAGGACTGGTACGATATCAAGGCCCCTTCCGT
EST: gi|213595543|gb|DB968507.1|DB968507
EST:     GGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGC                         CGCTGATCCCTTTGCCAAGAAGGACTGGTACGATATCAAGGCCCCTTCCGT
genomic: GGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGCgttagtgccc ... gaatccacagCGCTGATCCCTTTGCCAAGAAGGACTGGTACGATATCAAGGCCCCTTCCGT
EST: gi|17153668|gb|BM143601.1|BM143601
EST:     GGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGC                         CGCTGATCCCTTTGCCAAGAAGGACTGGTACGATATCAAGGCCCCTTCCGT
genomic: GGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGCgttagtgccc ... gaatccacagCGCTGATCCCTTTGCCAAGAAGGACTGGTACGATATCAAGGCCCCTTCCGT
EST: gi|192318967|gb|FK010587.1|FK010587
EST:     GGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGC                         CGCTGATCCCTTTGCCAAGAAGGACTGGTACGATATCAAGGCCCCTTCCGT
genomic: GGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGCgttagtgccc ... gaatccacagCGCTGATCCCTTTGCCAAGAAGGACTGGTACGATATCAAGGCCCCTTCCGT
EST: gi|192295006|gb|FG986725.1|FG986725
EST:     GGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGC                         CGCTGATCCCTTTGCCAAGAAGGACTGGTACGATATCAAGGCCCCTTCCGT
genomic: GGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGCgttagtgccc ... gaatccacagCGCTGATCCCTTTGCCAAGAAGGACTGGTACGATATCAAGGCCCCTTCCGT
EST: gi|6913653|gb|AW395183.1|AW395183
EST:     GGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGC                         CGCTGATCCCTTTGCCAAGAAGGACTGGTACGATATCAAGGCCCCTTCCGT
genomic: GGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGCgttagtgccc ... gaatccacagCGCTGATCCCTTTGCCAAGAAGGACTGGTACGATATCAAGGCCCCTTCCGT
EST: gi|24136812|gb|BU927322.1|BU927322
EST:     GGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGC                         CGCTGATCCCTTTGCCAAGAAGGACTGGTACGATATCAAGGCCCCTTCCGT
genomic: GGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGCgttagtgccc ... gaatccacagCGCTGATCCCTTTGCCAAGAAGGACTGGTACGATATCAAGGCCCCTTCCGT
EST: gi|37995820|gb|CF807409.1|CF807409
EST:     GGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGC                         CGCTGATCCCTTTGCCAAGAAGGACTGGTACGATATCAAGGCCCCTTCCGT
genomic: GGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGCgttagtgccc ... gaatccacagCGCTGATCCCTTTGCCAAGAAGGACTGGTACGATATCAAGGCCCCTTCCGT
EST: gi|192325439|gb|FK017195.1|FK017195
EST:     GGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGC                         CGCTGATCCCTTTGCCAAGAAGGACTGGTACGATATCAAGGCCCCTTCCGT
genomic: GGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGCgttagtgccc ... gaatccacagCGCTGATCCCTTTGCCAAGAAGGACTGGTACGATATCAAGGCCCCTTCCGT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CAGCCGCACCTTGATTCAGAGCAGAGCGACCTTGAAGAGCTATGGCTGTCGGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGCgttagtgcccattctcttcacttttttttttttttttttttatttctattgtcgtattctccattttaactctgatttgtttcttcttcttcttccgtgaatccacag

- - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA