1 5' 3' | 2 5' 3' | 3 5' 3' |
GAAATTGAATTCACACAAGAGATGGCTTCTCCTCTTCTTACTCCTTACAAGATGGGCAAATTCAATCTGTCCCATAGgtatctctatctctttttttccttcctatttccatagatttcaattgctgattaattttgcttgcag
species | Glycine max |
transcript | GLYMA01G44600.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GGCAAATTCAATCTGTCCCATAG AGTTGTTTTGGCACCGCTGACCAGACAGAGGTCTTACGACAACGTCCCACAEST: gi|6724334|gb|AW308733.1|AW308733
genomic: GGCAAATTCAATCTGTCCCATAGgtatctctat ... ttgcttgcagAGTTGTTTTGGCACCGCTGACCAGACAGAGGTCTTACGACAACGTCCCACA
EST: GGCAAATTCAATCTGTCCCATAG AGTTGTTTTGGCACCGCTGACCAGACAGAGGTCTTACGACAACGTCCCACAEST: gi|13480608|gb|BG509951.1|BG509951
genomic: GGCAAATTCAATCTGTCCCATAGgtatctctat ... ttgcttgcagAGTTGTTTTGGCACCGCTGACCAGACAGAGGTCTTACGACAACGTCCCACA
EST: CCTCTTCTTACTCCTTACAAGATGGGCAAATTCAATCTGTCCCATAG AGTTGTTTTGGCACCGCTGACCAGACAGAGGTCTTACGACAACGTCCCACAEST: gi|298197029|gb|HO041716.1|HO041716
genomic: CCTCTTCTTACTCCTTACAAGATGGGCAAATTCAATCTGTCCCATAGgtatctctat ... ttgcttgcagAGTTGTTTTGGCACCGCTGACCAGACAGAGGTCTTACGACAACGTCCCACA
EST: TCTCCTCTTCTTACTCCTTACAAGATGGGCAAATTCAATCTGTCCCATAG AGTTGTTTTGGCACCGCTGACCAGACAGAGGTCTTACGACAACGTCCCACAEST: gi|192297056|gb|FG990327.1|FG990327
genomic: TCTCCTCTTCTTACTCCTTACAAGATGGGCAAATTCAATCTGTCCCATAGgtatctctat ... ttgcttgcagAGTTGTTTTGGCACCGCTGACCAGACAGAGGTCTTACGACAACGTCCCACA
EST: TCTCCTCTTCTTACTCCTTACAAGATGGGCAAATTCAATCTGTCCCATAG AGTTGTTTTGGCACCGCTGACCAGACAGAGGTCTTACGACAACGTCCCACAEST: gi|193375207|gb|FK342469.1|FK342469
genomic: TCTCCTCTTCTTACTCCTTACAAGATGGGCAAATTCAATCTGTCCCATAGgtatctctat ... ttgcttgcagAGTTGTTTTGGCACCGCTGACCAGACAGAGGTCTTACGACAACGTCCCACA
EST: TCTCCTCTTCTTACTCCTTACAAGATGGGCAAATTCAATCTGTCCCATAG AGTTGTTTTGGCACCGCTGACCAGACAGAGGTCTTACGACAACGTCCCACAEST: gi|254345565|gb|GR851727.1|GR851727
genomic: TCTCCTCTTCTTACTCCTTACAAGATGGGCAAATTCAATCTGTCCCATAGgtatctctat ... ttgcttgcagAGTTGTTTTGGCACCGCTGACCAGACAGAGGTCTTACGACAACGTCCCACA
EST: ATTCAATCTGTCCCATAG AGTTGTTTTGGCACCGCTGACCAGACAGAGGTCTTACGACAACGTCCCACAEST: gi|13479195|gb|BG508538.1|BG508538
genomic: ATTCAATCTGTCCCATAGgtatctctat ... ttgcttgcagAGTTGTTTTGGCACCGCTGACCAGACAGAGGTCTTACGACAACGTCCCACA
EST: TCTCCTCTTCTTACTCCTTACAAGATGGGCAAATTCAATCTGTCCCATAG AGTTGTTTTGGCACCGCTGACCAGACAGAGGTCTTACGACAACGTCCCACAEST: gi|192295796|gb|FG990862.1|FG990862
genomic: TCTCCTCTTCTTACTCCTTACAAGATGGGCAAATTCAATCTGTCCCATAGgtatctctat ... ttgcttgcagAGTTGTTTTGGCACCGCTGACCAGACAGAGGTCTTACGACAACGTCCCACA
EST: TCTCCTCTTCTTACTCCTTACAAGATGGGCAAATTCAATCTGTCCCATAG AGTTGTTTTGGCACCGCTGACCAGACAGAGGTCTTACGACAACGTCCCACAEST: gi|33388659|gb|CA851866.1|CA851866
genomic: TCTCCTCTTCTTACTCCTTACAAGATGGGCAAATTCAATCTGTCCCATAGgtatctctat ... ttgcttgcagAGTTGTTTTGGCACCGCTGACCAGACAGAGGTCTTACGACAACGTCCCACA
EST: CTCCTCTTCTTACTCCTTACNAGGATGGGCAAATTCAATCTGTCCCATAG AGTTGTTTTGGCACCGCTGACCAGACAGAGGTCTTACGACAACGTCCCACAEST: gi|298196403|gb|HO041146.1|HO041146
genomic: CTCCTCTTCTTACTCCTTAC-AAGATGGGCAAATTCAATCTGTCCCATAGgtatctctat ... ttgcttgcagAGTTGTTTTGGCACCGCTGACCAGACAGAGGTCTTACGACAACGTCCCACA
EST: TCTCCTCTTCTTACTCCTTACGAGATGGGCAAATTCAATCTGTCCCATAG AGTTGTTTTGGCACCGCTGACCAGACAGAGGTCTTACGACAACGTCCCACAEST: gi|15814078|gb|BI786353.1|BI786353
genomic: TCTCCTCTTCTTACTCCTTACAAGATGGGCAAATTCAATCTGTCCCATAGgtatctctat ... ttgcttgcagAGTTGTTTTGGCACCGCTGACCAGACAGAGGTCTTACGACAACGTCCCACA
EST: TCTCCTCTTCTTACTCCTTACAAGATGGGCAAATTCAATCTGTCCCATAG AGTTGTTTTGGCACCGCTGACCAGACAGAGGTCTTACGACAACGTCCCACAEST: gi|33390375|gb|CA853570.1|CA853570
genomic: TCTCCTCTTCTTACTCCTTACAAGATGGGCAAATTCAATCTGTCCCATAGgtatctctat ... ttgcttgcagAGTTGTTTTGGCACCGCTGACCAGACAGAGGTCTTACGACAACGTCCCACA
EST: GGGCAAATTCAATCTGTCCCATAG AGTTGTTTTGGCACCGCTGACCAGACAGAGGTCTTACGACAACGTCCCACAEST: gi|8284685|gb|BE022227.1|BE022227
genomic: GGGCAAATTCAATCTGTCCCATAGgtatctctat ... ttgcttgcagAGTTGTTTTGGCACCGCTGACCAGACAGAGGTCTTACGACAACGTCCCACA
EST: CTCTTCTTACTCCTTACAAGATGGGCAAATTCAATCTGTCCCATAG AGTTGTTTTGGCACCGCTGACCAGACAGAGGTCTTACGACAACGTCCCACAEST: gi|19935988|gb|BQ080671.1|BQ080671
genomic: CTCTTCTTACTCCTTACAAGATGGGCAAATTCAATCTGTCCCATAGgtatctctat ... ttgcttgcagAGTTGTTTTGGCACCGCTGACCAGACAGAGGTCTTACGACAACGTCCCACA
EST: GGCAAATTCAATCTGTCCCATAG AGTTGTTTTGGCACCGCTGACCAGACAGAGGTCTTACGACAACGTCCCACAEST: gi|7638963|gb|AW733295.1|AW733295
genomic: GGCAAATTCAATCTGTCCCATAGgtatctctat ... ttgcttgcagAGTTGTTTTGGCACCGCTGACCAGACAGAGGTCTTACGACAACGTCCCACA
EST: CTCCTTACAAGATGGGCAAATTCAATCTGTCCCATAG AGTTGTTTTGGCACCGCTGACCAGACAGAGGTCTTACGACAACGTCCCACAEST: gi|15815611|gb|BI787886.1|BI787886
genomic: CTCCTTACAAGATGGGCAAATTCAATCTGTCCCATAGgtatctctat ... ttgcttgcagAGTTGTTTTGGCACCGCTGACCAGACAGAGGTCTTACGACAACGTCCCACA
EST: CTCCTTACAAGATGGGCAAATTCAATCTGTCCCATAG AGTTGTTTTGGCACCGCTGACCAGACAGAGGTCTTACGACAACGTCCCACAEST: gi|192322649|gb|FK014986.1|FK014986
genomic: CTCCTTACAAGATGGGCAAATTCAATCTGTCCCATAGgtatctctat ... ttgcttgcagAGTTGTTTTGGCACCGCTGACCAGACAGAGGTCTTACGACAACGTCCCACA
EST: TCTCCTCTTCTTACTCCTTACAAGATGGGCAAATTCAATCTGTCCCATAG AGTTGTTTTGGCACCGCTGACCAGACAGAGGTCTTGCGACAACGTCCCACAEST: gi|192324298|gb|FK018274.1|FK018274
genomic: TCTCCTCTTCTTACTCCTTACAAGATGGGCAAATTCAATCTGTCCCATAGgtatctctat ... ttgcttgcagAGTTGTTTTGGCACCGCTGACCAGACAGAGGTCTTACGACAACGTCCCACA
EST: TCTCCTCTTCTTACTCCTTACAAGATGGGCAAATTCAATCTGTCCCATAG AGTTGTTTTGGCACCGCTGACCAGACAGAGGTCTTACGACAACGTCCCACAEST: gi|14989963|gb|BI315636.1|BI315636
genomic: TCTCCTCTTCTTACTCCTTACAAGATGGGCAAATTCAATCTGTCCCATAGgtatctctat ... ttgcttgcagAGTTGTTTTGGCACCGCTGACCAGACAGAGGTCTTACGACAACGTCCCACA
EST: ATTCAATCTGTCCCATAG AGTTGTTTTGGCACCGCTGACCAGACAGAGGTCTTACGACAACGTCCCACAEST: gi|18732748|gb|BM527225.1|BM527225
genomic: ATTCAATCTGTCCCATAGgtatctctat ... ttgcttgcagAGTTGTTTTGGCACCGCTGACCAGACAGAGGTCTTACGACAACGTCCCACA
EST: CTCCTCTTCTTACTCCTTACAAGATGGGCAAATTCAATCTGTCCCATAG AGTTGTTTTGGCACCGCTGACCAGACAGAGGTCTTACGACAACGTCCCACAEST: gi|15000796|gb|BI321610.1|BI321610
genomic: CTCCTCTTCTTACTCCTTACAAGATGGGCAAATTCAATCTGTCCCATAGgtatctctat ... ttgcttgcagAGTTGTTTTGGCACCGCTGACCAGACAGAGGTCTTACGACAACGTCCCACA
EST: TCTCCTCTTCTTACTCCTTACAAGATGGGCAAATTCAATCTGTCCCATAG AGTTGTTTTGGCACCGCTGACCAGACAGAGGTCTTACGACAACGTCCCACAEST: gi|7639562|gb|AW733882.1|AW733882
genomic: TCTCCTCTTCTTACTCCTTACAAGATGGGCAAATTCAATCTGTCCCATAGgtatctctat ... ttgcttgcagAGTTGTTTTGGCACCGCTGACCAGACAGAGGTCTTACGACAACGTCCCACA
EST: CCTCTTCTTACTCCTTACAAGATGGGCAAATTCAATCTGTCCCATAG AGTTGTTTTGGCACCGCTGACCAGACAGAGGTCTTACGACAACGTCCCACAEST: gi|17400292|gb|BM177074.1|BM177074
genomic: CCTCTTCTTACTCCTTACAAGATGGGCAAATTCAATCTGTCCCATAGgtatctctat ... ttgcttgcagAGTTGTTTTGGCACCGCTGACCAGACAGAGGTCTTACGACAACGTCCCACA
EST: TCTCCTCTTCTTACTCCTTACAAGATGGGCAAATTCAATCTGTCCCATAG AGTTGTTTTGGCACCGCTGACCAGACAGAGGTCTTACGACAACGTCCCACAEST: gi|15815436|gb|BI787711.1|BI787711
genomic: TCTCCTCTTCTTACTCCTTACAAGATGGGCAAATTCAATCTGTCCCATAGgtatctctat ... ttgcttgcagAGTTGTTTTGGCACCGCTGACCAGACAGAGGTCTTACGACAACGTCCCACA
EST: CTCCTTACAAGATGGGCAAATTCAATCTGTCCCATAG AGTTGTTTTGGCACCGCTGACCAGACAGAGGTCTTACGACAACGTCCCACA
genomic: CTCCTTACAAGATGGGCAAATTCAATCTGTCCCATAGgtatctctat ... ttgcttgcagAGTTGTTTTGGCACCGCTGACCAGACAGAGGTCTTACGACAACGTCCCACA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAATTGAATTCACACAAGAGATGGCTTCTCCTCTTCTTACTCCTTACAAGATGGGCAAATTCAATCTGTCCCATAGgtatctctatctctttttttccttcctatttccatagatttcaattgctgattaattttgcttgcag
- - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - AAGATG