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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGGATTCCAAAGAGTAGGATACGATTGGCTAACTCTACAGTGCGCAGAGAAAACAAGAAAGCACTTTAGCTAAACTTCGTCGGTAAGgtaaggaggagtgtgttccttcattcttcactctaccaaccaaaaccctatcccttcccttttttacaatgctattatactcgtctttacttcttcgatc...

Basic information

species Glycine max
transcript GLYMA01G44560.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209727300|gb|BW663219.1|BW663219
EST:     CAGTGCGCAGAGAAAACAAGAAAGCACTTTAGCTAAACTTCGTCGGTAAG                         AGCCCAAACAAAACTTGGGAGGTATTATACAATACTTTCGATGAGTACTGC
genomic: CAGTGCGCAGAGAAAACAAGAAAGCACTTTAGCTAAACTTCGTCGGTAAGgtaaggagga ... ttttgtgtagAGCCCAAACAAAACTTGGGAGGTATTATACAATACTTTCGATGAGTACTGC
EST: gi|213589369|gb|DB961702.1|DB961702
EST:     CAGTGCGCAGAGAAAACAAGAAAGCACTTTAGCTAAACTTCGTCGGTAAG                         AGCCCAAACAAAACTTGGGAGGTATTATACAATACTTTCGATGAGTACTGC
genomic: CAGTGCGCAGAGAAAACAAGAAAGCACTTTAGCTAAACTTCGTCGGTAAGgtaaggagga ... ttttgtgtagAGCCCAAACAAAACTTGGGAGGTATTATACAATACTTTCGATGAGTACTGC
EST: gi|209697279|gb|BW655506.1|BW655506
EST:     CAGTGCGCAGAGAAAACAAGAAAGCACTTTAGCTAAACTTCGTCGGTAAG                         AGCCCAAACAAAACTTGGGGAGGTATTATACAATACTTTCGATGAGTACTG
genomic: CAGTGCGCAGAGAAAACAAGAAAGCACTTTAGCTAAACTTCGTCGGTAAGgtaaggagga ... ttttgtgtagAGCCCAAACAAAACTT-GGGAGGTATTATACAATACTTTCGATGAGTACTG
EST: gi|209727036|gb|BW675401.1|BW675401
EST:     CAGTGCGCAGAGAAAACAAGAAAGCACTTTAGCTAAACTTCGTCGGTAAG                         AGCCCAAACAAAACTTGGGAGGTATTATACAATACTTTCGATGAGTACTGC
genomic: CAGTGCGCAGAGAAAACAAGAAAGCACTTTAGCTAAACTTCGTCGGTAAGgtaaggagga ... ttttgtgtagAGCCCAAACAAAACTTGGGAGGTATTATACAATACTTTCGATGAGTACTGC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATGGATTCCAAAGAGTAGGATACGATTGGCTAACTCTACAGTGCGCAGAGAAAACAAGAAAGCACTTTAGCTAAACTTCGTCGGTAAGgtaaggaggagtgtgttccttcattcttcactctaccaaccaaaaccctatcccttcccttttttacaatgctattatactcgtctttacttcttcgatc

- - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccttccc