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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGGAAGGCCTTCGAGAGGACCTGTCTATCGTAGCCTCTTCGCCAAGGATGGATTCCCTGCTCCTATCCAAGGTCTCAATAGTTGCTGGGACGTTTTTCGgttagttcatcacttcaatttcacatctcttcattttcttctttcaatttcgatgcagagatccgatcaataatctgctcaacttaatttcatggaatct...

Basic information

species Glycine max
transcript GLYMA01G43470.2
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|12772380|gb|BG237307.1|BG237307
EST:     GAATTCCCTGCTCCTATCCAAGGTCTCAATAGTTGCTGGGACGTTTTTCG                         ATTGTCTGGTGAGAAATATCCATCAAATCCAATGCTTGGTCGCCGGGAAAT
genomic: GA-TTCCCTGCTCCTATCCAAGGTCTCAATAGTTGCTGGGACGTTTTTCGgttagttcat ... acttttgcagATTGTCTGTTGAGAAATATCCATCAAATCCAATGCTTGGTCGCCGGGAAAT
EST: gi|213596837|gb|DB964100.1|DB964100
EST:     GGATTCCCTGCTCCTATCCAAGGTCTCAATAGTTGCTGGGACGTTTTTCG                         ATTGTCTGTTGAGAAATATCCATCAAATCCAATGCTTGGTCGCCGGGAAAT
genomic: GGATTCCCTGCTCCTATCCAAGGTCTCAATAGTTGCTGGGACGTTTTTCGgttagttcat ... acttttgcagATTGTCTGTTGAGAAATATCCATCAAATCCAATGCTTGGTCGCCGGGAAAT
EST: gi|208183242|gb|GD981464.1|GD981464
EST:     TCTCAATAGTTGCTGGGACGTTTTTCG                         ATTGTCTGTTGAGAAATATCCATCAAATCCAATACTTGGTCGCCGGGAAAT
genomic: TCTCAATAGTTGCTGGGACGTTTTTCGgttagttcat ... acttttgcagATTGTCTGTTGAGAAATATCCATCAAATCCAATGCTTGGTCGCCGGGAAAT
EST: gi|209718138|gb|BW657797.1|BW657797
EST:     GGATTCCCTGCTCCTATCCAAGGTCTCAATAGTTGCTGGGACGTTTTTCG                         ATTGTCTGTTGAGAAATATCCATCAAATCCAATGCTTGGTCGCCGGGAAAT
genomic: GGATTCCCTGCTCCTATCCAAGGTCTCAATAGTTGCTGGGACGTTTTTCGgttagttcat ... acttttgcagATTGTCTGTTGAGAAATATCCATCAAATCCAATGCTTGGTCGCCGGGAAAT
EST: gi|213593798|gb|DB957918.1|DB957918
EST:     GGATTCCCTGCTCCTATCCAAGGTCTCAATAGTTGCTGGGACGTTTTTCG                         ATTGTCTGTTGAGAAATATCCATCAAATCCAATGCTTGGTCGCCGGGAAAT
genomic: GGATTCCCTGCTCCTATCCAAGGTCTCAATAGTTGCTGGGACGTTTTTCGgttagttcat ... acttttgcagATTGTCTGTTGAGAAATATCCATCAAATCCAATGCTTGGTCGCCGGGAAAT
EST: gi|213603942|gb|DB964962.1|DB964962
EST:     GGATTCCCTGCTCCTATCCAAGGTCTCAATAGTTGCTGGGACGTTTTTCG                         ATTGTCTGTTGAGAAATATCCATCAAATCCAATGCTTGGTCGCCGGGAAAT
genomic: GGATTCCCTGCTCCTATCCAAGGTCTCAATAGTTGCTGGGACGTTTTTCGgttagttcat ... acttttgcagATTGTCTGTTGAGAAATATCCATCAAATCCAATGCTTGGTCGCCGGGAAAT
EST: gi|209713723|gb|BW681863.1|BW681863
EST:     GGATTCCCTGCTCCTATCCAAGGTCTCAATAGTTGCTGGGACGTTTTTCG                         ATTGTCTGTTGAGAAATATCCATCAAATCCAATGCTTGGTCGCCGGGAAAT
genomic: GGATTCCCTGCTCCTATCCAAGGTCTCAATAGTTGCTGGGACGTTTTTCGgttagttcat ... acttttgcagATTGTCTGTTGAGAAATATCCATCAAATCCAATGCTTGGTCGCCGGGAAAT
EST: gi|209704411|gb|BW680594.1|BW680594
EST:     GGATTCCCTGCTCCTATCCAAGGTCTCAATAGTTGCTGGGACGTTTTTCG                         ATTGTCTGTTGAGAGATATCCATCAAATCCAATGCTTG
genomic: GGATTCCCTGCTCCTATCCAAGGTCTCAATAGTTGCTGGGACGTTTTTCGgttagttcat ... acttttgcagATTGTCTGTTGAGAAATATCCATCAAATCCAATGCTTG
EST: gi|193373262|gb|FK336142.1|FK336142
EST:     TGGGACGTTTTTCG                         ATTGTCTGTTGAGAAATATCCATCAAATCCAATGCTTGGTCGCCGGGAAAT
genomic: TGGGACGTTTTTCGgttagttcat ... acttttgcagATTGTCTGTTGAGAAATATCCATCAAATCCAATGCTTGGTCGCCGGGAAAT
EST: gi|213617043|gb|DB961523.1|DB961523
EST:     GGATTCCCTGCTCCTATCCAAGGTCTCAATAGTTTCTGGGACGTTTTTCG                         ATTGTCTGTTGAGAAATATCCATCAAATCCAATGCTTGGTCGCCGGGAAAT
genomic: GGATTCCCTGCTCCTATCCAAGGTCTCAATAGTTGCTGGGACGTTTTTCGgttagttcat ... acttttgcagATTGTCTGTTGAGAAATATCCATCAAATCCAATGCTTGGTCGCCGGGAAAT
EST: gi|209712293|gb|BW668487.1|BW668487
EST:     GGATTCCCTGCTCCTATCCAAGGTCTCAATAGTTGCTGGGACGTTTTTCG                         ATTGTCTGTTGAGAAATATCCATCAAATCCAATGCTTGGTCGCCGGGAAAT
genomic: GGATTCCCTGCTCCTATCCAAGGTCTCAATAGTTGCTGGGACGTTTTTCGgttagttcat ... acttttgcagATTGTCTGTTGAGAAATATCCATCAAATCCAATGCTTGGTCGCCGGGAAAT
EST: gi|209718875|gb|BW669062.1|BW669062
EST:     GGATTCCCTGCTCCTATCCAAGGTCTCAATAGTTGCTGGGACGTTTTTCG                         ATTGTCTGTTGAGAAATATCCATCAAATCCAATGCTTGGTCGCCGGGAAAT
genomic: GGATTCCCTGCTCCTATCCAAGGTCTCAATAGTTGCTGGGACGTTTTTCGgttagttcat ... acttttgcagATTGTCTGTTGAGAAATATCCATCAAATCCAATGCTTGGTCGCCGGGAAAT
EST: gi|16996081|gb|BM085453.1|BM085453
EST:     GGATTCCCTGCTCCTATCCAAGGTCTCAATAGTTGCTGGGACGTTTTTCG                         ATTGTCTGTTGAGAAATATCCATCAAATCCAATGCTTGGTCGCCGGGAAAT
genomic: GGATTCCCTGCTCCTATCCAAGGTCTCAATAGTTGCTGGGACGTTTTTCGgttagttcat ... acttttgcagATTGTCTGTTGAGAAATATCCATCAAATCCAATGCTTGGTCGCCGGGAAAT