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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATACGTGCAATACAACGTGTACGGAAACTTGTTCGAGGTCTCCTCCAAGTATGTCCCTCCCATTCGCCCTGTCGGTAGAGGCGCATACGGCATCGTTTGgtatctatccatgcgttttcccttttcttctctcttatacttcaatatcctcctcactgtttgttctttctcacttctcag

Basic information

species Glycine max
transcript GLYMA01G43100.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G43100.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os10g38950.1 (Oryza sativa), 5'ss of exon 1
GATACGTGCAATACAACGTGTACGGAAACTTGTTCGAGGTCTCCTCCAAGTATGTCCCTCCCATTCGCCCTGTCGGTAGAGGCGCATACGGCATCGTTTGgtatctatccatgcgttttcccttttcttctctcttatacttc--aatatcctcctcactgtttgttctttctcact-tctcag----------------
| |||||||  |||||||||||||| ||||| |||||||||||||||||||| | ||||||||| |||||  ||||  | ||||| |||||||| || ||||   | | | |     | ||||   || |    |||| | |     | | ||  | | |      ||    |  || | |  |                
GCTACGTGCTGTACAACGTGTACGGGAACTTCTTCGAGGTCTCCTCCAAGTACGCCCCTCCCATCCGCCCCATCGGCCGGGGCGCCTACGGCATTGTCTGgtgcgtttgcctcgccctcccctcccctcccgagttatgcgtgtgggtttactaattaatagcgaatccgagttgctatttttgttcgaaaattcgcgag

upper sequence: GLYMA01G43100.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os08g06060.1 (Oryza sativa), 5'ss of exon 1
GATACGTGCAATACAACGTGTACGGAAACTTGTTCGAGGTCTCCTCCAAGTATGTCCCTCCCATTCGCCCTGTCGGTAGAGGCGCATACGGCATCGTTTGgtatctatccatgcgttttcccttttcttctctcttatacttcaat--atcctcctc---actgtttgtt-ctttctcacttctcag-------------
| |||||||| ||||||||||| || ||| |||||||||| || |||||||| ||||||||||| ||||| |||||  | ||||| | ||||||| | ||||   | ||      |     |  ||| ||||  |   | |   ||   ||||||||   | ||||  || |||| |||       |             
GGTACGTGCAGTACAACGTGTATGGTAACCTGTTCGAGGTTTCGTCCAAGTACGTCCCTCCCATCCGCCCCGTCGGCCGCGGCGCCTGCGGCATCATCTGgtcagtttcagactttcacttcagttcatctccatctaattctgattcttcctcctctggattgttaattgctttgtcaacctcgtgtgatcgtgaattc

upper sequence: GLYMA01G43100.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G127141_T01 (Zea mays), 5'ss of exon 1
GATACGTGCAATACAACGTGTACGGAAACTTGTTCGAGGTCTCCTCCAAGTATGTCCCTCCCATTCGCCCTGTCGGTAGAGGCGCATACGGCATCGTTTGgtatctatccatgcgtt--------ttcccttttcttctctcttatacttcaatatcctcct-cactgtttgttctttct-cacttctcag---------
| |||||||  |||||||||||||||||| | |||||||||||||||||||| | ||| ||||| |||||  ||||| | ||||| |||||||| || ||||   |  ||   |  |        |||||   ||  | | ||  |  |   | |||   || |  | |||| |||  || | |  |   |         
GCTACGTGCTGTACAACGTGTACGGAAACCTCTTCGAGGTCTCCTCCAAGTACGCCCCACCCATCCGCCCCATCGGTCGCGGCGCCTACGGCATTGTCTGgtgcgtcccctccccctccccttccttccccactccccccgctggtgatggcaaatcgagctgctgtctttgctctgcctacgcgccgtggttgcgcgtg

upper sequence: GLYMA01G43100.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G123886_T02 (Zea mays), 5'ss of exon 1
GATACGTGCAATACAACGTGTACGGAAACTTGTTCGAGGTCTCCTCCAAGTATGTCCCTCCCATTCGCCCTGTCGGTAGAGGCGCATACGGCATCGTTTGgtatctatccatgcgttttcccttttcttctctcttatacttcaatatcctcctcactgtttgttctttctcacttctcag-------------
| |||||||| |||||||||||||||||| |  | ||||||||| ||||||| ||||| ||||| ||||| |||||  | ||||| | ||||||| | ||||   ||      | |    | |      |  |||  |   |   |     | |||||  | || | | |    |  |  |             
GCTACGTGCAGTACAACGTGTACGGAAACCTCCTGGAGGTCTCCGCCAAGTACGTCCCGCCCATCCGCCCCGTCGGCCGCGGCGCCTGCGGCATCATCTGgtgcgtacgtcgtcctccctcatcgatcgccttctcgtttgttcgttcgggcttcactactagtacgtaccggatcttttgtgcatgcatgcag

upper sequence: GLYMA01G43100.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv02s0025g00270.t01 (Vitis vinifera), 5'ss of exon 1
GATACGTGCAATACAACGTGTACGGAAACTTGTTCGAGGTCTCCTCCAAGTATGTCCCTCCCATTCGCCCTGTCGGTAGAGGCGCATACGGCATCGTTTGgtatctatccatgc--gttttcccttttcttctctcttatacttca-atatcctcctcactgtttgttctttctcacttctcag----------------
| ||||| |  ||||| |||||||||||||| |||||||||||  | |||||||| ||||| ||||| || || |||||||| ||||| ||||| || ||||   |     | |   |||   | ||  |||  | |||  |   |   ||  |  |   | ||| |   || ||   | |                   
GCTACGTACGCTACAATGTGTACGGAAACTTTTTCGAGGTCTCTGCAAAGTATGTTCCTCCGATTCGTCCGGTTGGTAGAGGTGCATATGGCATTGTCTGgtgagttattgtactaatttcaaccttatttccgtgttaatcagtatggattttggtatttatttatgggttttcgtgttttgttctgttgacctgcata

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151408614|gb|EV278422.1|EV278422
EST:     TATGTCCCTCCCATTCGCCCTGTCGGTAGAGGCGCATACGGCATCGTTTG                         TGCTGCTGTTAATTGCGATACGCACGAGGAAGTTGCCATAAAGAAGATTGG
genomic: TATGTCCCTCCCATTCGCCCTGTCGGTAGAGGCGCATACGGCATCGTTTGgtatctatcc ... cacttctcagTGCTGCTGTTAATTGCGATACGCACGAGGAAGTTGCCATAAAGAAGATTGG