1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
TTTGCTTCTCCGTGATGCTCCTTCTGCCATAGCTGGGGACATAGTTCACGACGACGATTCAACTCCCAAGAAGCCGGGTTGCGAGAACCAGTTCGTTCTGgtatacccactttacaaagttctctttttctcttttcatttctgggtttctcgctttttcctcgtactagaagcgtgcatggtcatggagcatcaaaatc...
species | Glycine max |
transcript | GLYMA01G42940.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: ACGACGATTCAACTCCCAAGAAGCCGGGTTGCGAGAACCAGTTCGTTCTG GTAAAAGTGCAAACATGGGTCAATGGTGTAGAGGATGTTGAATTTGTTGGTEST: gi|193495316|gb|FK459338.1|FK459338
genomic: ACGACGATTCAACTCCCAAGAAGCCGGGTTGCGAGAACCAGTTCGTTCTGgtatacccac ... taattgtcagGTAAAAGTGCAAACATGGGTCAATGGTGTAGAGGATGTTGAATTTGTTGGT
EST: AAGCCGGGTTGCGAGAACCAGTTCGTTCTG GTAAAAGTGCAAACATGGGTCAATGGTGTAGAGGATGTTGAATTTGTTGGTEST: gi|209729790|gb|BW658595.1|BW658595
genomic: AAGCCGGGTTGCGAGAACCAGTTCGTTCTGgtatacccac ... taattgtcagGTAAAAGTGCAAACATGGGTCAATGGTGTAGAGGATGTTGAATTTGTTGGT
EST: ACGACGATTCAACTCCCAAGAAGCCGGGTTGCGAGAACCAGTTCGTTCTG GTAAAAGTGCAAACATGGGTCAATGGTGTAGAGGATGTTGAATTTGTTGGTEST: gi|213614822|gb|DB956958.1|DB956958
genomic: ACGACGATTCAACTCCCAAGAAGCCGGGTTGCGAGAACCAGTTCGTTCTGgtatacccac ... taattgtcagGTAAAAGTGCAAACATGGGTCAATGGTGTAGAGGATGTTGAATTTGTTGGT
EST: ACGACGATTCAACTCCCAAGAAGCCGGGTTGCGAGAACCAGTTCGTTCTG GTAAAAGTGCAAACATGGGTCAATGGTGTAGAGGATGTTGAATTTGTTGGT
genomic: ACGACGATTCAACTCCCAAGAAGCCGGGTTGCGAGAACCAGTTCGTTCTGgtatacccac ... taattgtcagGTAAAAGTGCAAACATGGGTCAATGGTGTAGAGGATGTTGAATTTGTTGGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTGCTTCTCCGTGATGCTCCTTCTGCCATAGCTGGGGACATAGTTCACGACGACGATTCAACTCCCAAGAAGCCGGGTTGCGAGAACCAGTTCGTTCTGgtatacccactttacaaagttctctttttctcttttcatttctgggtttctcgctttttcctcgtactagaagcgtgcatggtcatggagcatcaaaatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC