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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGTGGAGAAGGCCGTCAAACGCCTCCCCGGGATCCGTGAAGCCATCGTCGACGTCCTCAACAACCGCGCCCACGTCATCTTCTACCCCTCCTTCGTTAACgtaagtaacccaaacacactcctccgtctacattaattcactctcctcgcttgttcattatttattttcag

Basic information

species Glycine max
transcript GLYMA01G42790.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|24206020|gb|BU965273.1|BU965273
EST:     CGTCCTCAATTTTCGTCGCCCACGTCATCTTCTACCCCTCCTTCGTTAAC                         GTGGAGACTATTCGCGAGGCAATTGAGGACGCTGGTTTCGAAGCCGCGTTA
genomic: CGTCCTCAACAACCG-CGCCCACGTCATCTTCTACCCCTCCTTCGTTAACgtaagtaacc ... ttattttcagGTGGAGACTATTCGCGAGGCAATTGAGGACGCTGGTTTCGAAGCCGCGTTA
EST: gi|209726230|gb|BW659582.1|BW659582
EST:     ACGTCCTCAACAACCGCGCCCACGTCATCTTCTACCCCTCCTTCGTTAAC                         GTGGAGACTATTCGCGAGGCAATTGAGGACGCTGGTTTCGAAGCCGCGTTA
genomic: ACGTCCTCAACAACCGCGCCCACGTCATCTTCTACCCCTCCTTCGTTAACgtaagtaacc ... ttattttcagGTGGAGACTATTCGCGAGGCAATTGAGGACGCTGGTTTCGAAGCCGCGTTA
EST: gi|254332482|gb|GR843959.1|GR843959
EST:     ACGTCCTCAACAACCGCGCCCACGTCATCTTCTACCCCTCCTTCGTTAAC                         GTGGAGACTATTCGCGAGGCAATTGAGGACGCTGGTTTCGAAGCCGCGTTA
genomic: ACGTCCTCAACAACCGCGCCCACGTCATCTTCTACCCCTCCTTCGTTAACgtaagtaacc ... ttattttcagGTGGAGACTATTCGCGAGGCAATTGAGGACGCTGGTTTCGAAGCCGCGTTA
EST: gi|209707677|gb|BW676656.1|BW676656
EST:     ACGTCCTCAACAACCGCGCCCACGTCATCTTCTACCCCTCCTTCGTTAAC                         GTGGAGACTATTCGCGAGGCAATTGAGGACGCTGGTTTCGAAGCCGCGTTA
genomic: ACGTCCTCAACAACCGCGCCCACGTCATCTTCTACCCCTCCTTCGTTAACgtaagtaacc ... ttattttcagGTGGAGACTATTCGCGAGGCAATTGAGGACGCTGGTTTCGAAGCCGCGTTA