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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTAGCCAAGTACAAGCTCGTCTTCCTGGGTGACCAATCCGTGGGCAAAACCAGCATCATCACTCGCTTCATGTATGATAAATTCGATAACACCTATCAGgtttgtccctaaccctaaccctcagatccaatccaaaactgcatcgaaaactataaagttagctcttaaaggctaaaatcacttcttaaaccttcactct...

Basic information

species Glycine max
transcript GLYMA01G41100.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G41100.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os07g31370.1 (Oryza sativa), 5'ss of exon 1
TTTAGCCAAGTACAAGCTCGTCTTCCTGGGTGACCAATCCGTGGGCAAAACCAGCATCATCACTCGCTTCATGTATGATAAATTCGATAACACCTATCAGgtttgtccctaa-ccctaaccctcagatccaatccaaaactgcatcgaaaactataaagttagctctta---aaggctaaaatcacttcttaaaccttcactct
  | |||||||||||||| || ||||| || ||||| ||||| ||||| |||||||||||||| ||||||||||| || || ||||| |||||||| |||||  || | |   | ||| |  |     |   | |    ||   |         |   ||| | ||| |     ||| | |  |     |    || |      
GCTCGCCAAGTACAAGCTGGTGTTCCTCGGCGACCAGTCCGTCGGCAAGACCAGCATCATCACCCGCTTCATGTACGACAAGTTCGACAACACCTACCAGgtgcgttcttcttctctatcggtttcgccgtctgctcgcctctcttcggggggttggggttggatctgatcgggggccagatccggcggtggcgccctgg----

upper sequence: GLYMA01G41100.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G169694_T01 (Zea mays), 5'ss of exon 1
TTTAGCCAAGTACAAGCTCGTCTTCCTGGGTGACCAATCCGTGGGCAAAACCAGCATCATCACTCGCTTCATGTATGATAAATTCGATAACACCTATCAGgtttgt---ccctaaccctaaccctc---agatccaatccaaaac--tgcatcgaaaactataaa-gttagctcttaaaggctaaaatcac-ttcttaaaccttcactct
  | |||||||||||||||||||||||||| ||||| ||||| ||||| || ||||||||||| ||||||||||| || || |||||||||||||| |||||  |    |||  |||    || ||    | ||| ||||  | |  | | |||    || |    || | |||      | |     |   ||  |             
GCTCGCCAAGTACAAGCTCGTCTTCCTGGGGGACCAGTCCGTCGGCAAGACGAGCATCATCACCCGCTTCATGTACGACAAGTTCGATAACACCTACCAGgtacgacggcccgcaccgcctccttctctggctccgatcccgatcgatccctcgcgtgctgttcgtgtcatctcccccgcgttgggggcgggttagtggg----------

upper sequence: GLYMA01G41100.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G075719_T01 (Zea mays), 5'ss of exon 1
TTTAGCCAAGTACAAGCTCGTCTTCCTGGGTGACCAATCCGTGGGCAAAACCAGCATCATCACTCGCTTCATGTATGATAAATTCGATAACACCTATCAGgtttgtccctaaccctaaccctcagatccaatccaaaactgcatcgaaaactata-aagttagctcttaaaggctaaaatcacttcttaaacc---ttcactct
  | |||||||||||||||||||||||||| ||||| ||||| ||||| |||||||||||||| ||||||||||| ||||| ||||| ||||| || |||||  | |      |    | ||| |||||    | |   | | |||    || |    |||| ||      | |     |   ||  |        | || || 
GCTCGCCAAGTACAAGCTCGTCTTCCTGGGGGACCAGTCCGTCGGCAAGACCAGCATCATCACCCGCTTCATGTACGATAAGTTCGACAACACTTACCAGgtacgacggcccgcacgcctctccgatcccgatcga---tccctcgcgtgctgttcgtgttatcttcccgcgtcggggttgggtttgtgggttggatccaatc-

upper sequence: GLYMA01G41100.1 (Glycine max), 5'ss of exon 1
lower sequence: AT2G44610.1 (Arabidopsis thaliana), 5'ss of exon 1
TTTAGCCAAGTACAAGCTCGTCTTCCTGGGTGACCAATCCGTGGGCAAAACCAGCATCATCACTCGCTTCATGTATGATAAATTCGATAACACCTATCAGgtttgtccctaaccctaaccctcagatccaatc-caaaactgcatcgaaaactataaagttagctcttaaaggctaaaatc----acttcttaaaccttcactct
  | || ||||| ||||| || || ||||| || |||||||| ||||||||||| ||||| ||||| |||||||| || |||||||| ||||| || |||||   |  | |    | |     || |   ||| | |   ||||      ||  |    |    | | |  |  || | ||    |  ||  |    || | |  
ACTCGCTAAGTATAAGCTGGTGTTTCTGGGAGATCAATCCGTCGGCAAAACCAGTATCATTACTCGATTCATGTACGACAAATTCGACAACACTTACCAGgtaaatttccattgttcaaatctaggtattatctcgacgatgcac----gacgtttgcttctattttgagggattatagtcgggaaaatcccagggtttgattg-

upper sequence: GLYMA01G41100.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv15s0021g00640.t01 (Vitis vinifera), 5'ss of exon 1
TTTAGCCAAGTACAAGCTCGTCTTCCTGGGTGACCAATCCGTGGGCAAAACCAGCATCATCACTCGCTTCATGTATGATAAATTCGATAACACCTATCAGgtttgtccctaaccctaaccctcagat-ccaatccaaaactgcatcgaaaactataaagttagctcttaaaggctaaaatcacttcttaaaccttcactct
| | ||||||||||||||||||||| |||| ||||||||||| || || || |||||||||||||| |||||||| || |||||||| ||||||||||||||     | | |        ||    |  | ||    | |    | |     | |    || | | |||            | || ||  | |   |  ||
TCTCGCCAAGTACAAGCTCGTCTTCTTGGGAGACCAATCCGTCGGAAAGACTAGCATCATCACTCGATTCATGTACGACAAATTCGACAACACCTATCAGgtcaaatctttatggatctgcttgtttatcgattttcagcaattttgttggtt-tgtgttttggttttagttttggtgcgaatttgtttgatcccgatcct

upper sequence: GLYMA01G41100.1 (Glycine max), 5'ss of exon 1
lower sequence: EDP09951 (Chlamydomonas reinhardtii), 5'ss of exon 2
TTTAGCCAAGTACAAGCTCGTCTTCCTGGGTGACCAATCCGTGGGCAAAACCAGCATCATCACTCGCTTCATGTATGATAAATTCGATAACACCTATCAGgtttgtccctaaccctaaccctcagatccaatccaaaactgcatcgaaaactataaagttagctcttaaaggctaaaatcacttcttaaaccttcactct
                   ||||||||||| ||||| || |||||||| |||  ||||||||| || ||||||||||| || ||||||||||| || |||||  || |    | |    |||    | |||  | | |  || |   |  || |   | |  |  |  |                               
-------------------GTCTTCCTGGGAGACCAGTCTGTGGGCAAGACCTCCATCATCACCCGATTCATGTATGACAAGTTCGATAACACGTACCAGgtgcgtactctgcgcatttcctt---tacaa--cgacaacgcctgacatgcttttgcggtctccgtgcag------------------------------

upper sequence: GLYMA01G41100.1 (Glycine max), 5'ss of exon 1
lower sequence: EFJ30542 (Selaginella moellendorffii), 5'ss of exon 1
TTTAGCCAAGTACAAGCTCGTCTTCCTGGGTGACCAATCCGTGGGCAAAACCAGCATCATCACTCGCTTCATGTATGATAAATTCGATAACACCTATCAGgtttgtccctaaccctaaccctcagatccaatccaaaactgcatcgaaaactataaagttagctcttaaaggctaaaatcacttcttaaaccttcactct
  | || ||||||||||||||||| || || || || || ||||| || || ||||||||||| || |||||||||||||| || || ||||| || ||||| ||      |     |   ||   ||     |        || | ||| | | |||                                          
GCTTGCAAAGTACAAGCTCGTCTTTCTCGGCGATCAGTCTGTGGGGAAGACGAGCATCATCACGCGATTCATGTATGATAAGTTTGACAACACATACCAGgtatga----gattacgagtttcttctctctcactttggcaaattggaaattttcaag------------------------------------------

upper sequence: GLYMA01G41100.1 (Glycine max), 5'ss of exon 1
lower sequence: EFJ22994 (Selaginella moellendorffii), 5'ss of exon 1
TTTAGCCAAGTACAAGCTCGTCTTCCTGGGTGACCAATCCGTGGGCAAAACCAGCATCATCACTCGCTTCATGTATGATAAATTCGATAACACCTATCAGgtttgtccctaaccctaaccctcagatccaatccaaaactgcatcgaaaactataaagttagctcttaaaggctaaaatcacttcttaaaccttcactct
  | || ||||||||||||||||| || || || || || ||||| || || ||||||||||| || |||||||||||||| || || ||||| || ||||| ||      |     |   ||   ||  |           || | ||  | | |||                                          
GCTTGCGAAGTACAAGCTCGTCTTTCTCGGCGATCAGTCTGTGGGGAAGACGAGCATCATCACGCGATTCATGTATGATAAGTTTGACAACACATACCAGgtatga----gattacgagtttcttctctcactttgg--caaattggaatttttcaag------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254315767|gb|GR825576.1|GR825576
EST:     GCATCATCACTCGCTTCATGTATGATAAATTCGATAACACCTATCAG                         GCTACAATTGGTATTGATTTTCTATCAAAAACTATGTATCTTGAAGATCGA
genomic: GCATCATCACTCGCTTCATGTATGATAAATTCGATAACACCTATCAGgtttgtccct ... cctcatgcagGCTACAATTGGTATTGATTTTCTATCAAAAACTATGTATCTTGAAGATCGA
EST: gi|254337567|gb|GR845244.1|GR845244
EST:     GCATCATCACTCGCTTCATGTATGATAAATTCGATAACACCTATCAG                         GCTACAATTGGTATTGATTTTCTATCAAAAACTATGTATCTTGAAGATCGA
genomic: GCATCATCACTCGCTTCATGTATGATAAATTCGATAACACCTATCAGgtttgtccct ... cctcatgcagGCTACAATTGGTATTGATTTTCTATCAAAAACTATGTATCTTGAAGATCGA
EST: gi|207803954|gb|GD774019.1|GD774019
EST:     CCAGCATCATCACTCGCTTCATGTATGATAAATTCGATAACACCTATCAG                         GCTACAATTGGTATTGATTTTCTATCAAAAACTATGTATCTTGAAGATCGA
genomic: CCAGCATCATCACTCGCTTCATGTATGATAAATTCGATAACACCTATCAGgtttgtccct ... cctcatgcagGCTACAATTGGTATTGATTTTCTATCAAAAACTATGTATCTTGAAGATCGA
EST: gi|208286428|gb|GE086514.1|GE086514
EST:     CCAGCATCATCACTCGCTTCATGTATGATAAATTCGATAACACCTATCAG                         GCTACAATTGGTATTGATTTTCTATCAAAAACTATGTATCTTGAAGATCGA
genomic: CCAGCATCATCACTCGCTTCATGTATGATAAATTCGATAACACCTATCAGgtttgtccct ... cctcatgcagGCTACAATTGGTATTGATTTTCTATCAAAAACTATGTATCTTGAAGATCGA
EST: gi|193541374|gb|FK499126.1|FK499126
EST:     CGATAACTACCTTATTCAG                         GCTACAATTGGTATTGATTTTCTATCAAAAACTATGTATCTTGAAGATCG
genomic: CGATAAC-ACC-TA-TCAGgtttgtccct ... cctcatgcagGCTACAATTGGTATTGATTTTCTATCAAAAACTATGTATCTTGAAGATCG
EST: gi|254322229|gb|GR837643.1|GR837643
EST:     CCAGCATCATCACTCGCTTCATGTATGATAAATTCGATAACACCTATCAG                         GCTACAATTGGTATTGATTTTCTATCAAAAACTATGTATCTTGAAGATCGA
genomic: CCAGCATCATCACTCGCTTCATGTATGATAAATTCGATAACACCTATCAGgtttgtccct ... cctcatgcagGCTACAATTGGTATTGATTTTCTATCAAAAACTATGTATCTTGAAGATCGA
EST: gi|254348134|gb|GR851813.1|GR851813
EST:     CCAGCATCATCACTCGCTTCATGTATGATAAATTCGATAACACCTATCAG                         GCTACAATTGGTATTGATTTTCTATCAAAAACTATGTATCTTGAAGATCGA
genomic: CCAGCATCATCACTCGCTTCATGTATGATAAATTCGATAACACCTATCAGgtttgtccct ... cctcatgcagGCTACAATTGGTATTGATTTTCTATCAAAAACTATGTATCTTGAAGATCGA
EST: gi|192322517|gb|FK014638.1|FK014638
EST:     CCAGCATCATCACTCGCTTCATGTATGATAAATTCGATAACACCTATCAG                         GCTACAATTGGTATTGATTTTCTATCAAAAACTATGTATCTTGAAGATCGA
genomic: CCAGCATCATCACTCGCTTCATGTATGATAAATTCGATAACACCTATCAGgtttgtccct ... cctcatgcagGCTACAATTGGTATTGATTTTCTATCAAAAACTATGTATCTTGAAGATCGA
EST: gi|208296568|gb|GE089696.1|GE089696
EST:     CCAGCATCATCACTCGCTTCATGTACGATAAATTCGATAACACCTATCAG                         GCTACAATTGGTATTGATTTTCTATCAAAAACTATGTATCTCGAAGATCGA
genomic: CCAGCATCATCACTCGCTTCATGTATGATAAATTCGATAACACCTATCAGgtttgtccct ... cctcatgcagGCTACAATTGGTATTGATTTTCTATCAAAAACTATGTATCTTGAAGATCGA
EST: gi|254319917|gb|GR830941.1|GR830941
EST:     CCAGCATCATCACTCGCTTCATGTATGATAAATTCGATAACACCTATCAG                         GCTACAATTGGTATTGATTTTCTATCAAAAACTATGTATCTTGAAGATCGA
genomic: CCAGCATCATCACTCGCTTCATGTATGATAAATTCGATAACACCTATCAGgtttgtccct ... cctcatgcagGCTACAATTGGTATTGATTTTCTATCAAAAACTATGTATCTTGAAGATCGA
EST: gi|193617486|gb|FK568852.1|FK568852
EST:     CCAGCATCATCACTCGCTTCATGTATGATAAATTCGATAACACCTATCAG                         GCTACAATTGGTATTGATTTTCTATCAAAAACTATGTATCTTGAAGATCGA
genomic: CCAGCATCATCACTCGCTTCATGTATGATAAATTCGATAACACCTATCAGgtttgtccct ... cctcatgcagGCTACAATTGGTATTGATTTTCTATCAAAAACTATGTATCTTGAAGATCGA
EST: gi|193381439|gb|FK347492.1|FK347492
EST:     CCAGCATCATCACTCGCTTCATGTACGATAAATTCGATAACACCTATCAG                         GCTACAATTGGTATTGATTTTCTATCAAAAACTATGTATCTCGAAGATCGA
genomic: CCAGCATCATCACTCGCTTCATGTATGATAAATTCGATAACACCTATCAGgtttgtccct ... cctcatgcagGCTACAATTGGTATTGATTTTCTATCAAAAACTATGTATCTTGAAGATCGA