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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGATCCGCGCCGATGGTGTGACCTCTGGTGGTTACAAAATACAAAATCTAAAATCGAAATAAAACGTTATTGGGGCAGAAATCAAAACCATAGATAGAGgtacgtacgaattttttcttctgaaactccttttttgtttctgtcgctttatccgaatttcttcttctcatcgtgtatataaataatattagtgaaatta...

Basic information

species Glycine max
transcript GLYMA01G40930.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151412213|gb|EV282025.1|EV282025
EST:     GGGGCAGAAATCAAAACCATAGATAGAG                         TTATTACTCCCTATAACATGTGGTGGTGATTTGAAGATGGCAGACTTACCA
genomic: GGGGCAGAAATCAAAACCATAGATAGAGgtacgtacga ... tttgcttcagTTATTACTCCCTATAACATGTGGTGGTGATTTGAAGATGGCAGACTTACCA
EST: gi|207823267|gb|GD795286.1|GD795286
EST:     AAAATCGAAATAAAACGTTATTGGGGCAGAAATCAAAACCATAGATAGAG                         TTATTACTCCCTATAACATGTGGTGGTGATTTGAAGATGGCAGACTTACCA
genomic: AAAATCGAAATAAAACGTTATTGGGGCAGAAATCAAAACCATAGATAGAGgtacgtacga ... tttgcttcagTTATTACTCCCTATAACATGTGGTGGTGATTTGAAGATGGCAGACTTACCA
EST: gi|151402601|gb|EV272414.1|EV272414
EST:     CGAAATAAAACGTTATTGGGGCAGAAATCAAAACCATAGATAGAG                         TTATTACTCCCTATAACATGTGGTGGTGATTTGAAGATGGCAGACTTACCA
genomic: CGAAATAAAACGTTATTGGGGCAGAAATCAAAACCATAGATAGAGgtacgtacga ... tttgcttcagTTATTACTCCCTATAACATGTGGTGGTGATTTGAAGATGGCAGACTTACCA
EST: gi|193408693|gb|FK370401.1|FK370401
EST:     AAAATCGAAATAAAACGTTATTGGGGCAGAAATCAAAACCATAGATAGAG                         TTATTACTCCCTATAACATGTGGTGGTGATTTGAAGATGGCAGACTTACCA
genomic: AAAATCGAAATAAAACGTTATTGGGGCAGAAATCAAAACCATAGATAGAGgtacgtacga ... tttgcttcagTTATTACTCCCTATAACATGTGGTGGTGATTTGAAGATGGCAGACTTACCA
EST: gi|192300500|gb|FG988857.1|FG988857
EST:     AAAATCGAAATAAAACGTTATTGGGGCAGAAATCAAAACCATAGATAGAG                         TTATTACTCCCTATAACATGTGGTGGTGATTTGAAGATGGCAGACTTACCA
genomic: AAAATCGAAATAAAACGTTATTGGGGCAGAAATCAAAACCATAGATAGAGgtacgtacga ... tttgcttcagTTATTACTCCCTATAACATGTGGTGGTGATTTGAAGATGGCAGACTTACCA
EST: gi|193328923|gb|FK295167.1|FK295167
EST:     AAAATCGAAATAAAACGTTATTGGGGCAGAAATCAAAACCATAGATAGAG                         TTATTACTCCCTATAACATGTGGTGGTGATTTGAAGATGGCAGACTTACCA
genomic: AAAATCGAAATAAAACGTTATTGGGGCAGAAATCAAAACCATAGATAGAGgtacgtacga ... tttgcttcagTTATTACTCCCTATAACATGTGGTGGTGATTTGAAGATGGCAGACTTACCA