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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCATGGGGACCACGCCTCGCACCTCCAAACCATTGATTTGGTGAAAGAATACAATTCTCAGTTTCAAGATAAGGTTGTAGCCATCATGCTCGACACCAAGgtcaactcatttttcccataacatccattttcgtcggttttagctgaagctagttttgtctgttgacatttttaatttcaatgttagcatcaaactcatcattattgttcatattcgaatgcttcttatgtttgatggtggtaattaatgtgttgtgagcttgtaacttgctttgcag

Basic information

species Glycine max
transcript GLYMA01G40860.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G40860.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv02s0012g01170.t01 (Vitis vinifera), 5'ss of exon 2
GCATGGGGACCACGCCTCGCACCTCCAAACCATTGATTTGGTGAAAGAATACAATTCTCAGTTTCAAGATAAGGTTGTAGCCATCATGCTCGACACCAAGgtcaactcatttttcccataacatccattttcgtcggttttagctgaagctagttttgtctgttgacatttttaatttcaatgttagcatcaaactcatcattattgttcatattcgaatgcttcttatgtttgatggtggtaattaatgtgttgtgagcttgtaacttgctttgcag
 ||||||||||| || ||||||    ||||||||||| |||| |||||||||||| |||| ||| |||| |||||| ||||||| ||||| |||||||||||   ||  ||   || |||| ||   | |   ||  | | | ||     |    |  ||  |    ||| ||||||| |   | |     |||   || |  ||||                                                                       
ACATGGGGACCATGCATCGCACAAGAAAACCATTGATCTGGTCAAAGAATACAATGCTCAATTTGAAGACAAGGTTATAGCCATAATGCTGGACACCAAGgtatgctggttg--ccaataa-atgtttctaattctttgtcaactttctttttcctcttcaataatgattattaatttgagattga-----aaagggattacaattgc----------------------------------------------------------------------