1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CAACATTGGGATCATGGATGCGGCTTACTTCGTCGGCAGATCTGAGATTCTTTCTTGGATCAACTCAACTCTGCAACTCAATCTCTCCAAAGTCGAAGAGgttatttcgatcctatttctccatttaggtttaatttccgatcgttgatttcttactagatcttctattttcttggatcgttatactctcag
species | Glycine max |
transcript | GLYMA01G39720.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TTTCTTGGATCAACTCAACTCTGCAACTCAATCTCTCCAAAGTCGAAGAG GCATGTTCCGGCGCGGTTCACTGCCAGCTTCTCGATGCCGCTCATCCAGGGEST: gi|193716853|gb|FK649861.1|FK649861
genomic: TTTCTTGGATCAACTCAACTCTGCAACTCAATCTCTCCAAAGTCGAAGAGgttatttcga ... atactctcagGCATGTTCCGGCGCGGTTCACTGCCAGCTTCTCGATGCCGCTCATCCAGGG
EST: TTTCTTGGATCAACTCAACTCTGCAACTCAATCTCTCCAAAGTCGAAGAG GCATGTTCCGGCGCGGTTCACTGCCAGCTTCTCGATGCCGCTCATCCAGGGEST: gi|192301066|gb|FG987991.1|FG987991
genomic: TTTCTTGGATCAACTCAACTCTGCAACTCAATCTCTCCAAAGTCGAAGAGgttatttcga ... atactctcagGCATGTTCCGGCGCGGTTCACTGCCAGCTTCTCGATGCCGCTCATCCAGGG
EST: TTTCTTGGATCAACTCAACTCTGCAACTCAATCTCTCCAAAGTCGAAGAG GCATGTTCCGGCGCGGTTCACTGCCAGCTTCTCGATGCCGCTCATCCAGGGEST: gi|192296790|gb|FG993088.1|FG993088
genomic: TTTCTTGGATCAACTCAACTCTGCAACTCAATCTCTCCAAAGTCGAAGAGgttatttcga ... atactctcagGCATGTTCCGGCGCGGTTCACTGCCAGCTTCTCGATGCCGCTCATCCAGGG
EST: TTTCTTGGATCAACTCAACTCTGCAACTCAATCTCTCCAAAGTCGAAGAG GCATGTTCCGGCGCGGTTCACTGCCAACTTCTCGGTGCCGCTCATCCAGGG
genomic: TTTCTTGGATCAACTCAACTCTGCAACTCAATCTCTCCAAAGTCGAAGAGgttatttcga ... atactctcagGCATGTTCCGGCGCGGTTCACTGCCAGCTTCTCGATGCCGCTCATCCAGGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAACATTGGGATCATGGATGCGGCTTACTTCGTCGGCAGATCTGAGATTCTTTCTTGGATCAACTCAACTCTGCAACTCAATCTCTCCAAAGTCGAAGAGgttatttcgatcctatttctccatttaggtttaatttccgatcgttgatttcttactagatcttctattttcttggatcgttatactctcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA