Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAGATGACTGTCATTAAGGAAGAGCAACAACCAAACCAAATAGCTGGCCACAAAGAACTTGGTCACAAAAGTCTCCTTCAGAGCGATGCACTCTATCAGgttcattcaattaccttcattttcattttgtctctcaaagtaaacaattttttttcttcacttctctataattaatacacgaattggtggtgcag

Basic information

species Glycine max
transcript GLYMA01G39460.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192329697|gb|FK022949.1|FK022949
EST:     TGGTCACAAAAGTCTCCTTCAGAGCGATGCACTCTATCAG                         TATATACTTGAAACCAGTGCGTACCCAAGAGAGCATGAGAGCTTGAAGGAG
genomic: TGGTCACAAAAGTCTCCTTCAGAGCGATGCACTCTATCAGgttcattcaa ... ggtggtgcagTATATACTTGAAACCAGTGTGTACCCAAGAGAGCATGAGAGCTTGAAGGAG
EST: gi|213590575|gb|DB973320.1|DB973320
EST:     ACAAAGAACTTGGTCACAAAAGTCTCCTTCAGAGCGATGCACTCTATCAG                         TATATACTTGAAACCAGTGTGTACCCAAGAGAGCATGAGAGCTTGAAGGAG
genomic: ACAAAGAACTTGGTCACAAAAGTCTCCTTCAGAGCGATGCACTCTATCAGgttcattcaa ... ggtggtgcagTATATACTTGAAACCAGTGTGTACCCAAGAGAGCATGAGAGCTTGAAGGAG
EST: gi|7587911|gb|AW703717.1|AW703717
EST:     ACAAAGAACTTGGTCACAAAAGTCTCCTTCAGAGCGATGCACTCTATCAG                         TATATACTTGAAACCAGTGTGTACCCAAGAGAGCATGAGAGCTTGAAGGAG
genomic: ACAAAGAACTTGGTCACAAAAGTCTCCTTCAGAGCGATGCACTCTATCAGgttcattcaa ... ggtggtgcagTATATACTTGAAACCAGTGTGTACCCAAGAGAGCATGAGAGCTTGAAGGAG
EST: gi|193354483|gb|FK321231.1|FK321231
EST:     ACAAAGAACTTGGTCACAAAAGTCTCCTTCAGAGCGATGCACTCTATCAG                         TATATACTTGAGACCAGTGTGTACCCAAGAGAGCATGAGAGCTTGAAGGAG
genomic: ACAAAGAACTTGGTCACAAAAGTCTCCTTCAGAGCGATGCACTCTATCAGgttcattcaa ... ggtggtgcagTATATACTTGAAACCAGTGTGTACCCAAGAGAGCATGAGAGCTTGAAGGAG
EST: gi|254344201|gb|GR855286.1|GR855286
EST:     ACAAAGAACTTGGTCACAAAAGTCTCCTTCAGAGCGATGCACTCTATCAG                         TATATACTTGAAACCAGTGTGTACCCAAGAGAGCATGAGAGCTTGAAGGAG
genomic: ACAAAGAACTTGGTCACAAAAGTCTCCTTCAGAGCGATGCACTCTATCAGgttcattcaa ... ggtggtgcagTATATACTTGAAACCAGTGTGTACCCAAGAGAGCATGAGAGCTTGAAGGAG
EST: gi|193337528|gb|FK304224.1|FK304224
EST:     ACAAAGAACTTGGTCACAAAAGTCTCCTTCAGAGCGATGCACTCTATCAG                         TATATACTTGAAACCAGTTGTGTACCCAAGAGAGCATGAGAGCTTGAAGG
genomic: ACAAAGAACTTGGTCACAAAAGTCTCCTTCAGAGCGATGCACTCTATCAGgttcattcaa ... ggtggtgcagTATATACTTGAAACCAGT-GTGTACCCAAGAGAGCATGAGAGCTTGAAGG
EST: gi|192319030|gb|FK006870.1|FK006870
EST:     ACAAAGAACTTGGTCACAAAAGTCTCCTTCAGAGCGATGCACTCTATCAG                         TATATACTTGAAACCAGTGTGTACCCAAGAGAGCATGAGAGCTTGAAGGAG
genomic: ACAAAGAACTTGGTCACAAAAGTCTCCTTCAGAGCGATGCACTCTATCAGgttcattcaa ... ggtggtgcagTATATACTTGAAACCAGTGTGTACCCAAGAGAGCATGAGAGCTTGAAGGAG
EST: gi|192302884|gb|FG998566.1|FG998566
EST:     ACAAAGAACTTGGTCACAAAAGTCTCCTTCAGAGCGATGCACTCTATCAG                         TATATACTTGAAACCAGTGTGTACCCAAGAGAGCATGAGAGCTTGAAGGAG
genomic: ACAAAGAACTTGGTCACAAAAGTCTCCTTCAGAGCGATGCACTCTATCAGgttcattcaa ... ggtggtgcagTATATACTTGAAACCAGTGTGTACCCAAGAGAGCATGAGAGCTTGAAGGAG
EST: gi|193402708|gb|FK367170.1|FK367170
EST:     ACAAAGAACTTGGTCACAAAAGTCTCCTTCAGAGCGATGCACTCTATCAG                         TATATACTTGAAACCAGTGTGTGCCCAAGAGAGCATGAGAGCTTGAAGGAG
genomic: ACAAAGAACTTGGTCACAAAAGTCTCCTTCAGAGCGATGCACTCTATCAGgttcattcaa ... ggtggtgcagTATATACTTGAAACCAGTGTGTACCCAAGAGAGCATGAGAGCTTGAAGGAG
EST: gi|254341478|gb|GR850691.1|GR850691
EST:     ACAAAGAACTTGGTCACAAAAGTCTCCTTCAGAGCGATGCACTCTATCAG                         TATATACTTGAAACCAGTGTGTACCCAAGAGAGCATGAGAGCTTGAAGGAG
genomic: ACAAAGAACTTGGTCACAAAAGTCTCCTTCAGAGCGATGCACTCTATCAGgttcattcaa ... ggtggtgcagTATATACTTGAAACCAGTGTGTACCCAAGAGAGCATGAGAGCTTGAAGGAG
EST: gi|192319031|gb|FK006871.1|FK006871
EST:     ACAAAGAACTTGGTCACAAAAGTCTCCTTCAGAGCGATGCACTCTATCAG                         TATATACTTGAAACCAGTGTGTACCCAAGAGAGCATGAGAGCTTGAAGGAG
genomic: ACAAAGAACTTGGTCACAAAAGTCTCCTTCAGAGCGATGCACTCTATCAGgttcattcaa ... ggtggtgcagTATATACTTGAAACCAGTGTGTACCCAAGAGAGCATGAGAGCTTGAAGGAG
EST: gi|254336450|gb|GR842629.1|GR842629
EST:     ACAAAGAACTTGGTCACAAAAGTCTCCTTCAGAGCGATGCACTCTATCAG                         TATATACTTGAAACCAGTGTGTACCCAAGAGAGCATGAGAGCTTGAAGGAG
genomic: ACAAAGAACTTGGTCACAAAAGTCTCCTTCAGAGCGATGCACTCTATCAGgttcattcaa ... ggtggtgcagTATATACTTGAAACCAGTGTGTACCCAAGAGAGCATGAGAGCTTGAAGGAG
EST: gi|192312912|gb|FK004054.1|FK004054
EST:     ACAAAGAACTTGGTCACAAAAGTCTCCTTCAGAGCGATGCACTCTATCAG                         TATATACTTGAAACCAGTGTGTACCCAAGAGAGCATGAGAGCTTGAAGGAG
genomic: ACAAAGAACTTGGTCACAAAAGTCTCCTTCAGAGCGATGCACTCTATCAGgttcattcaa ... ggtggtgcagTATATACTTGAAACCAGTGTGTACCCAAGAGAGCATGAGAGCTTGAAGGAG
EST: gi|254334127|gb|GR849045.1|GR849045
EST:     ACAAAGAACTTGGTCACAAAAGTCTCCTTCAGAGCGATGCACTCTATCAG                         TATATACTTGAAACCAGTGTGTACCCAAGAGAGCATGAGAGCTTGAAGGAG
genomic: ACAAAGAACTTGGTCACAAAAGTCTCCTTCAGAGCGATGCACTCTATCAGgttcattcaa ... ggtggtgcagTATATACTTGAAACCAGTGTGTACCCAAGAGAGCATGAGAGCTTGAAGGAG
EST: gi|7591460|gb|AW707192.1|AW707192
EST:     ACAAAGAACTTGGTCACAAAAGTCTCCTTCAGAGCGATGCACTCTATCAG                         TATATACTTGAAACCAGTGTGTACCCAAGAGAGCATGAGAGCTTGAAGGAG
genomic: ACAAAGAACTTGGTCACAAAAGTCTCCTTCAGAGCGATGCACTCTATCAGgttcattcaa ... ggtggtgcagTATATACTTGAAACCAGTGTGTACCCAAGAGAGCATGAGAGCTTGAAGGAG
EST: gi|192312913|gb|FK004055.1|FK004055
EST:     ACAAAGAACTTGGTCACAAAAGTCTCCTTCAGAGCGATGCACTCTATCAG                         TATATACTTGAAACCAGTGTGTACCCAAGAGAGCATGAGAGCTTGAAGGAG
genomic: ACAAAGAACTTGGTCACAAAAGTCTCCTTCAGAGCGATGCACTCTATCAGgttcattcaa ... ggtggtgcagTATATACTTGAAACCAGTGTGTACCCAAGAGAGCATGAGAGCTTGAAGGAG
EST: gi|298174983|gb|HO017978.1|HO017978
EST:     ACAAAGAACTTGGTCACAAAAGTCTCCTTCAGAGCGATGCACTCTATCAG                         TATATACTTGAAACCAGTGTGTACCCAAGAGAGCATGAGAGCTTGAAGGAG
genomic: ACAAAGAACTTGGTCACAAAAGTCTCCTTCAGAGCGATGCACTCTATCAGgttcattcaa ... ggtggtgcagTATATACTTGAAACCAGTGTGTACCCAAGAGAGCATGAGAGCTTGAAGGAG
EST: gi|254317284|gb|GR826229.1|GR826229
EST:     ACAAAGAACTTGGTCACAAAAGTCTCCTTCAGAGCGATGCACTCTATCAG                         TATATACTTGAAACCAGTGTGTACCCAAGAGAGCATGAGAGCTTGAAGGAG
genomic: ACAAAGAACTTGGTCACAAAAGTCTCCTTCAGAGCGATGCACTCTATCAGgttcattcaa ... ggtggtgcagTATATACTTGAAACCAGTGTGTACCCAAGAGAGCATGAGAGCTTGAAGGAG
EST: gi|192299316|gb|FG990741.1|FG990741
EST:     ACAAAGAACTTGGTCACAAAAGTCTCCTTCAGAGCGATGCACTCTATCAG                         TATATACTTGAAACCAGTGTGTACCCAAGAGAGCATGAGAGCTTGAAGGAG
genomic: ACAAAGAACTTGGTCACAAAAGTCTCCTTCAGAGCGATGCACTCTATCAGgttcattcaa ... ggtggtgcagTATATACTTGAAACCAGTGTGTACCCAAGAGAGCATGAGAGCTTGAAGGAG
EST: gi|209697719|gb|BW655620.1|BW655620
EST:     ACAAAGAACTTGGTCACAAAAGTCTCCTTCAGAGCGATGCACTCTATCAG                         TATATACTTGAAACCAGTGTGTACCCAAGAGAGCATGAGAGCTTGAAGGAG
genomic: ACAAAGAACTTGGTCACAAAAGTCTCCTTCAGAGCGATGCACTCTATCAGgttcattcaa ... ggtggtgcagTATATACTTGAAACCAGTGTGTACCCAAGAGAGCATGAGAGCTTGAAGGAG
EST: gi|192294842|gb|FG987531.1|FG987531
EST:     ACAAAGAACTTGGTCACAAAAGTCTCCTTCAGAGCGATGCACTCTATCAG                         TATATACTTGAAACCAGTGTGTACCCAAGAGAGCATGAGAGCTTGAAGGAA
genomic: ACAAAGAACTTGGTCACAAAAGTCTCCTTCAGAGCGATGCACTCTATCAGgttcattcaa ... ggtggtgcagTATATACTTGAAACCAGTGTGTACCCAAGAGAGCATGAGAGCTTGAAGGAG
EST: gi|37996206|gb|CF807795.1|CF807795
EST:     ACAAAGAACTTGGTCACAAAAGTCTCCTTCAGAGCGATGCACTCTATCAG                         TATATACTTGAAACCAGTGTGTACCCAAGAGAGCATGAGAGCTTGAAGGAG
genomic: ACAAAGAACTTGGTCACAAAAGTCTCCTTCAGAGCGATGCACTCTATCAGgttcattcaa ... ggtggtgcagTATATACTTGAAACCAGTGTGTACCCAAGAGAGCATGAGAGCTTGAAGGAG
EST: gi|13252345|gb|BG363248.1|BG363248
EST:     ACAAAGAACTTGGTCACAAAAGTCTCCTTCAGAGCGATGCACTCTATCAG                         TATATACTTGAAACCAGTGTGTACCCAAGAGAGCATGAGAGCTTGAAGGAG
genomic: ACAAAGAACTTGGTCACAAAAGTCTCCTTCAGAGCGATGCACTCTATCAGgttcattcaa ... ggtggtgcagTATATACTTGAAACCAGTGTGTACCCAAGAGAGCATGAGAGCTTGAAGGAG
EST: gi|254317493|gb|GR826477.1|GR826477
EST:     ACAAAGAACTTGGTCACAAAAGTCTCCTTCAGAGCGATGCACTCTATCAG                         TATATACTTGAAACCAGTGTGTACCCAAGAGAGCATGAGAGCTTGAAGGAG
genomic: ACAAAGAACTTGGTCACAAAAGTCTCCTTCAGAGCGATGCACTCTATCAGgttcattcaa ... ggtggtgcagTATATACTTGAAACCAGTGTGTACCCAAGAGAGCATGAGAGCTTGAAGGAG
EST: gi|192298656|gb|FG988567.1|FG988567
EST:     ACAAAGAACTTGGTCACAAAAGTCTCCTTCAGAGCGATGCACTCTATCAG                         TATATACTTGAAACCAGTGTGTACCCAAGAGAGCATGAGAGCTTGAAGGAG
genomic: ACAAAGAACTTGGTCACAAAAGTCTCCTTCAGAGCGATGCACTCTATCAGgttcattcaa ... ggtggtgcagTATATACTTGAAACCAGTGTGTACCCAAGAGAGCATGAGAGCTTGAAGGAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGAGATGACTGTCATTAAGGAAGAGCAACAACCAAACCAAATAGCTGGCCACAAAGAACTTGGTCACAAAAGTCTCCTTCAGAGCGATGCACTCTATCAGgttcattcaattaccttcattttcattttgtctctcaaagtaaacaattttttttcttcacttctctataattaatacacgaattggtggtgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAC