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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGCAAATGAGGTTGAAGTCCTCTTTCATCGGAGATCGTCTCTTACGCTGTTCAACTTCAAGGCACCAACCTCTTCCTCAACTATTCCGTTACAACCCTGgttcttccttttccccaaccttcttcttcttccaatttttttttttcattctccagctcacgcttttcgttttttgtatttttgtgacag

Basic information

species Glycine max
transcript GLYMA01G39200.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213615033|gb|DB960758.1|DB960758
EST:     TTCAACTTCAAGGCACCAACCTCTTCCTCAACTATTCCGTTACAACCCTG                         GAACCAAGCATGTTTCGATGCAGTTATCTAGAACACTTTCTGGCTTGACCA
genomic: TTCAACTTCAAGGCACCAACCTCTTCCTCAACTATTCCGTTACAACCCTGgttcttcctt ... tttgtgacagGAACCAAGCATGTTTCGATGCAGTTATCTAGAACACTTTCTGGCTTGACCA
EST: gi|209704050|gb|BW673650.1|BW673650
EST:     TTCAACTTCAAGGCACCAACCTCTTCCTCAACTATTCCGTTACAACCCTG                         GAACCAAGCATGTTTCGATGCAGTTATCTAGAACACTTTCTGGCTTGACCA
genomic: TTCAACTTCAAGGCACCAACCTCTTCCTCAACTATTCCGTTACAACCCTGgttcttcctt ... tttgtgacagGAACCAAGCATGTTTCGATGCAGTTATCTAGAACACTTTCTGGCTTGACCA
EST: gi|209710614|gb|BW676540.1|BW676540
EST:     TTCAACTTCAAGGCACCAACCTCTTCCTCAACTATTCCGTTACAACCCTG                         GAACCAAGCATGTTTCGATGCAGTTATCTAGAACACTTTCTGGCTTGACCA
genomic: TTCAACTTCAAGGCACCAACCTCTTCCTCAACTATTCCGTTACAACCCTGgttcttcctt ... tttgtgacagGAACCAAGCATGTTTCGATGCAGTTATCTAGAACACTTTCTGGCTTGACCA
EST: gi|12691283|gb|BG157619.1|BG157619
EST:     TTCAACTTCAAGGCACCAACCTCTTCCTCAACTATTCCGTTACAACCCTG                         GAACCAAGCATGTTTCGATGCAGTTATCTAGAACACTTTCTGGCTTGACCA
genomic: TTCAACTTCAAGGCACCAACCTCTTCCTCAACTATTCCGTTACAACCCTGgttcttcctt ... tttgtgacagGAACCAAGCATGTTTCGATGCAGTTATCTAGAACACTTTCTGGCTTGACCA
EST: gi|13125644|gb|BG316214.1|BG316214
EST:     TTCAACTTCAAGGCACCAACCTCTTCCTCAACTATTCCGTTACAACCCTG                         GAACCAAGCATGTTTCGATGCAGTTATCTAGAACACTTTCTGGCTTGACCA
genomic: TTCAACTTCAAGGCACCAACCTCTTCCTCAACTATTCCGTTACAACCCTGgttcttcctt ... tttgtgacagGAACCAAGCATGTTTCGATGCAGTTATCTAGAACACTTTCTGGCTTGACCA
EST: gi|151401050|gb|EV270864.1|EV270864
EST:     TTCAACTTCAAGGCACCAACCTCTTCCTCAACTATTCCGTTACAACCCTG                         GAACCAAGCATGTTTCGATGCAGTTATCTAGAACACTTTCTGGCTTGACCA
genomic: TTCAACTTCAAGGCACCAACCTCTTCCTCAACTATTCCGTTACAACCCTGgttcttcctt ... tttgtgacagGAACCAAGCATGTTTCGATGCAGTTATCTAGAACACTTTCTGGCTTGACCA
EST: gi|192305235|gb|FG993973.1|FG993973
EST:     TTCAACTTCAAGGCACCAACCTCTTCCTCAACTATTCCGTTACAACCCTG                         GAACCAAGCATGTTTCGATGCAGTTATCTAGAACACTTTCTGGCTTGACCA
genomic: TTCAACTTCAAGGCACCAACCTCTTCCTCAACTATTCCGTTACAACCCTGgttcttcctt ... tttgtgacagGAACCAAGCATGTTTCGATGCAGTTATCTAGAACACTTTCTGGCTTGACCA
EST: gi|17023236|gb|BM094270.1|BM094270
EST:     TTCAACTTCAAGGCACCAACCTCTTCCTCAACTATTCCGTTACAACCCTG                         GAACCAAGCATGTTTCGATGCAGTTATCTAGAACACTTTCTGGCTTGACCA
genomic: TTCAACTTCAAGGCACCAACCTCTTCCTCAACTATTCCGTTACAACCCTGgttcttcctt ... tttgtgacagGAACCAAGCATGTTTCGATGCAGTTATCTAGAACACTTTCTGGCTTGACCA
EST: gi|213589240|gb|DB957772.1|DB957772
EST:     TTCAACTTCAAGGCACCAACCTCTTCCTCAACTATTCCGTTACAACCCTG                         GAACCAAGCATGTTTCGATGCAGTTATCTAGAACACTTTCTGGCTTGACCA
genomic: TTCAACTTCAAGGCACCAACCTCTTCCTCAACTATTCCGTTACAACCCTGgttcttcctt ... tttgtgacagGAACCAAGCATGTTTCGATGCAGTTATCTAGAACACTTTCTGGCTTGACCA
EST: gi|298197093|gb|HO041836.1|HO041836
EST:     TTCAACTTCAAGGCACCAACCTCTTCCTCAACTATTCCGTTACAACCCTG                         GAACCAAGCATGTTTCGATGCAGTTATCTAGAACACTTTCTGGCTTGACCA
genomic: TTCAACTTCAAGGCACCAACCTCTTCCTCAACTATTCCGTTACAACCCTGgttcttcctt ... tttgtgacagGAACCAAGCATGTTTCGATGCAGTTATCTAGAACACTTTCTGGCTTGACCA
EST: gi|151410050|gb|EV279858.1|EV279858
EST:     TTCAACTTCAAGGCACCAACCTCTTCCTCAACTATTCCGTTACAACCCTG                         GAACCAAGCATGTTTCGATGCAGTTATCTAGAACACTTTCTGGCTTGACCA
genomic: TTCAACTTCAAGGCACCAACCTCTTCCTCAACTATTCCGTTACAACCCTGgttcttcctt ... tttgtgacagGAACCAAGCATGTTTCGATGCAGTTATCTAGAACACTTTCTGGCTTGACCA
EST: gi|192300116|gb|FG991892.1|FG991892
EST:     TTCAACTTCAAGGCACCAACCTCTTCCTCAACTATTCCGTTACAACCCTG                         GAACCAAGCATGTTTCGATGCAGTTATCTAGAACACTTTCT-GCTTGACCA
genomic: TTCAACTTCAAGGCACCAACCTCTTCCTCAACTATTCCGTTACAACCCTGgttcttcctt ... tttgtgacagGAACCAAGCATGTTTCGATGCAGTTATCTAGAACACTTTCTGGCTTGACCA
EST: gi|298189864|gb|HO038267.1|HO038267
EST:     TTCAACTTCAAGGCACCAACCTCTTCCTCAACTATTCCGTTACAACCCTG                         GAACCAAGCATGTTTCGATGCAGTTATCTAGAACACTTTCTGGCTTGACCA
genomic: TTCAACTTCAAGGCACCAACCTCTTCCTCAACTATTCCGTTACAACCCTGgttcttcctt ... tttgtgacagGAACCAAGCATGTTTCGATGCAGTTATCTAGAACACTTTCTGGCTTGACCA