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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGCCATCTCGTGTCACTTGTTGGATACTCAATTTCTGGTGGCCAGAGGATGTTGGTCTATGAATTTATTCCCAATAACACATTGGAATATCACCTCCATGgtaactactacatatacattctttgaactcatgtcacttgtgaaaccataaccctgaaatttattgatatattaagatttagatgtgagacttttaatgc...

Basic information

species Glycine max
transcript GLYMA01G38110.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G38110.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv04s0023g01570.t01 (Vitis vinifera), 5'ss of exon 2
CGCCATCTCGTGTCACTTGTTGGATACTCAATTTCTGGTGGCCAGAGGATGTTGGTCTATGAATTTATTCCCAATAACACATTGGAATATCACCTCCATGgtaactacta----catatacattctt--tgaactcatgtcacttgtgaa-accataaccctgaaatttattga-tatattaagatttagatgtga---gacttttaatgc--------------------------------------------------
    |||| ||||||||||| ||||| |  ||| ||| ||| ||| |||||||||| ||||||||| ||| ||| || ||||||||| | ||||| |||||||| |  |     |||  ||   |||  |||  | |     ||| |  | |  | || ||| |  | ||  || || ||     ||   ||| |    |  || |||                                                     
----ATCTTGTGTCACTTGTGGGATATTGCATTGCTGATGGGCAGCGGATGTTGGTTTATGAATTTGTTCACAACAAAACATTGGAACACCACCTTCATGGTAAgttgtgagctcatggactagcttactgacattaccctgcttctatataaaacaaacctcatttatacagaatagatgtcctttccaatgagcattgctttctaacagtcaatttttttcctaatcatttcaattatcaaaatttcagttgcaggaag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213596209|gb|DB960194.1|DB960194
EST:     GTTGGTCTATGAATTTATTCCCAATAACACATTGGAATATCACCTCCATG                         GAAAGGGTAGGCCTACCATGGATTGGCCAACTAGAATGCGGATTGCAATAG
genomic: GTTGGTCTATGAATTTATTCCCAATAACACATTGGAATATCACCTCCATGgtaactacta ... tgatatgcagGAAAGGGTAGGCCTACCATGGATTGGCCAACTAGAATGCGGATTGCAATAG