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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTTCGACGGCTACGCTCACCTCTCCTCCGGCCTCTCTTGCGGTCTTGCTGGCCTCTCCGCTGGCATGGCCATTGGCATTGTTGGCGACGCCGGTGTTAGgtattctcactccttttctactctctctttttctttcgaaaaagatgcgtgtagttataattattttcttgcatatggtttggtatttggttcaaggcca...

Basic information

species Glycine max
transcript GLYMA01G37320.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G37320.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os02g34510.1 (Oryza sativa), 5'ss of exon 1
TCTTCGACGGCTACGCTCACCTCTCCTCCGGCCTCTCTTGCGGTCTTGCTGGCCTCTCCGCTGGCATGGCCATTGGCATTGTTGGCGACGCCGGTGTTAGgt-attctcactcctt--ttctactctctctttttctttcgaaaaagat---gcgtgtagttat-aattattttcttgcatatggtttggtatttggttcaaggcca
|||||||||||||||| |||||||||||||||||| | ||||| || || |||||| |||| || |||||||| ||||| || ||||||||||| || |||| || | ||  ||    | |  | | | |    | | |  ||     |     ||| | || | ||| ||  ||  | ||  |||    |   ||           
TCTTCGACGGCTACGCGCACCTCTCCTCCGGCCTCGCGTGCGGCCTCGCCGGCCTCGCCGCCGGGATGGCCATCGGCATCGTCGGCGACGCCGGCGTCAGgttatccccatcccgaaatcccccccacccaaaatgtgttaaactttttttgatgtggatttgttaataatactccggaatgaggtaaaattgctgaact-------

upper sequence: GLYMA01G37320.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os05g01560.1 (Oryza sativa), 5'ss of exon 2
TCTTCGACGGCTACGCTCACCTCTCCTCCGGCCTCTCTTGCGGTCTTGCTGGCCTCTCCGCTGGCATGGCCATTGGCATTGTTGGCGACGCCGGTGTTAGgtattctcactccttttctactctctctttttctttcgaaaaagatgcgtgtagttata-attattttcttgcatatggtttggtatttggttcaaggcca-
|||||||||| ||||| |||||||||||||| ||| | ||||| || || || ||| |||| ||||||||||| ||||| || ||||||||||| || |||||  ||| |||   |||  ||| |||  |  | |     |    |   |  |   |   | || ||  |   ||   | ||   | ||| |   || |   
TCTTCGACGGTTACGCCCACCTCTCCTCCGGTCTCGCCTGCGGCCTCGCCGGTCTCGCCGCCGGCATGGCCATCGGCATCGTCGGCGACGCCGGAGTCAGgtaccctccctctcattcccctc-ctcagtcccatctactactactaattacaacaagggagtagttattattattaagcttt-caattgctgttagcctgc

upper sequence: GLYMA01G37320.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM5G893252_T01 (Zea mays), 5'ss of exon 2
TCTTCGACGGCTACGCTCACCTCTCCTCCGGCCTCTCTTGCGGTCTTGCTGGCCTCTCCGCTGGCATGGCCATTGGCATTGTTGGCGACGCCGGTGTTAGgtattctcactccttttctactctctctttttctttcgaaaaagatgcgtgtagttataattattttcttgcatatggtttggtatttggttcaaggcca-------
|||||||||||||||| |||||||||||||| ||| | ||||| || ||||||||| | || ||||||||||| ||||| || || |||||||| |||||||| | | |  |  |   | |  |  |  |   ||       | |||    |  | ||  | ||| ||  | | |       ||     |    || |||       
TCTTCGACGGCTACGCGCACCTCTCCTCCGGACTCGCCTGCGGCCTCGCTGGCCTCGCTGCCGGCATGGCCATCGGCATCGTCGGAGACGCCGGAGTTAGgtactgtaatactctgattgcagttgccatcctttgt-----acatgtccatgctaat--tgattctcagggaaaaaaaactgtcgccaggcttagaccaagcaatt

upper sequence: GLYMA01G37320.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G028432_T01 (Zea mays), 5'ss of exon 1
TCTTCGACGGCTACGCTCACCTCTCCTCCGGCCTCTCTTGCGGTCTTGCTGGCCTCTCCGCTGGCATGGCCATTGGCATTGTTGGCGACGCCGGTGTTAGgtattctcactccttttctactctctctttttctttcgaaaaagatgcgtgtagttataattattt-tcttgcatatggtttggtatttggttcaaggcca
|||| |||||||| || ||||| || ||||||||  | || ||||||||||| ||  | || ||||||||||||||||| ||||| || || ||||| |||||    | || | | | ||   | |  |  | | |         ||  ||    |||  |  |   |   |||   |   ||| |     ||| |   | 
TCTTTGACGGCTATGCCCACCTGTCGTCCGGCCTTGCCTGTGGTCTTGCTGGGCTTGCTGCAGGCATGGCCATTGGCATCGTTGGTGATGCTGGTGTCAGgtaaagacgcttcctct-tatcatattctgctatatgctttggtttggctgataatatgctggtcaatgcagcagcagtaatggcaggcacttctaaaact

upper sequence: GLYMA01G37320.1 (Glycine max), 5'ss of exon 1
lower sequence: AC216067.3_FGT002 (Zea mays), 5'ss of exon 2
TCTTCGACGGCTACGCTCACCTCTCCTCCGGCCTCTCTTGCGGTCTTGCTGGCCTCTCCGCTGGCATGGCCATTGGCATTGTTGGCGACGCCGGTGTTAGgta---ttctcactccttttctactctctctttttctttcgaaaaagatgcgtgtagttataattattttcttgcat-atggtttggtatttggttcaaggcca
| || || |||||||||||||| || ||||| ||  | || || |||||||| ||  | |||||||||||||| ||||||||||| || || || || |||||    || | |||  ||| || |     |  |   ||   |  |  | | | |  |  ||  || | |        ||||   |    ||| |     ||  
TTTTTGATGGCTACGCTCACCTTTCGTCCGGGCTTGCCTGTGGCCTTGCTGGGCTTGCAGCTGGCATGGCCATCGGCATTGTTGGTGATGCTGGAGTCAGgtaaagctccctctctctttgtagtggacatcatatattt--actatgtccttttcctactatctactattcaatgccatggccagaatgttgatattgtgc--

upper sequence: GLYMA01G37320.1 (Glycine max), 5'ss of exon 1
lower sequence: AT1G19910.1 (Arabidopsis thaliana), 5'ss of exon 2
TCTTCGACGGCTACGCTCACCTCTCCTCCGGCCTCTCTTGCGGTCTTGCTGGCCTCTCCGCTGGCATGGCCATTGGCATTGTTGGCGACGCCGGTGTTAGgta-ttctcactccttttctactctctctttttctttcgaaaaagatgcgtgtagt-tataattattttcttgcatatggtttggtatttggttcaaggcca
| ||||| ||||| ||||| ||||| ||||| ||  |||| ||||| ||||| |||||||| || ||||| ||||| ||||| ||||| |||||||||||||| |||||  |    ||   || | |  | |     | ||    ||  ||  | |   |    |  || |   | |   | |     ||||||  |  |  
TATTCGATGGCTATGCTCATCTCTCTTCCGGTCTTGCTTGTGGTCTCGCTGGTCTCTCCGCCGGTATGGCTATTGGAATTGTCGGCGATGCCGGTGTTAGgtaattctcgattaaatttctctatatgatgtataacctaattcaattggtcgaatacgttggaaacttttcagaaaatatcttaggcttggtttgattc--

upper sequence: GLYMA01G37320.1 (Glycine max), 5'ss of exon 1
lower sequence: AT1G75630.2 (Arabidopsis thaliana), 5'ss of exon 2
TCTTCGACGGCTACGCTCACCTCTCCTCCGGCCTCTCTTGCGGTCTTGCTGGCCTCTCCGCTGGCATGGCCATTGGCATTGTTGGCGACGCCGGTGTTAGgtattctcactccttttctactctctctttttctttcgaaaaagatgcgtgtagttataattattttcttgcatatggtttggtatttggttcaaggcca--
| ||||| ||||| ||||| ||||| || || ||  |||| ||||||||||| ||||| ||||| ||||| ||||| || || || || || ||||||||||| |  |  || | | ||||    ||||     || ||          | |  |   | ||    |  |  | | | ||  |   | | ||    |     
TATTCGATGGCTATGCTCATCTCTCTTCTGGGCTAGCTTGTGGTCTTGCTGGTCTCTCTGCTGGTATGGCTATTGGAATCGTCGGTGATGCTGGTGTTAGgtaattgctatc-tctgctacatgatcttaactgtttgattgcagcaattttgatcg-attttcacttgtttagaagtttctgagatagctttgttgtttgt

upper sequence: GLYMA01G37320.1 (Glycine max), 5'ss of exon 1
lower sequence: PP1S2_120V6.1 (Physcomitrella patens), 5'ss of exon 2
TCTTCGACGGCTACGCTCACCTCTCCTCCGGCCTCTCTTGCGGTCTTGCTGGCCTCTCCGCTGGCATGGCCATTGGCATTGTTGGCGACGCCGGTGTTAGgtattctcactccttttctactc-tctctttttctttcgaaaaagatgcgtgtagttataa-------ttattttcttgcatatggtttggtatttgg-ttcaaggcca----------------------------------------------------------------
| ||||||||||| |||||||| || || ||  | || |||||||| ||||| || |||||||||||||||||||| |||||||| || || || || ||||| |    |    | |   | | ||| |      |  | || | ||  ||  | |  | |        | |||||||  ||     ||   |  ||  ||   |  ||                                                                
TGTTCGACGGCTATGCTCACCTTTCATCTGGTTTGTCGTGCGGTCTAGCTGGTCTGTCCGCTGGCATGGCCATTGGTATTGTTGGAGATGCTGGGGTCAGgtaataattcaagatctgagcacatctataagaaatgtgtaacacataggttgaatggtgaatcttgtctcttttcttcgattcaaattcagagctgacttttggatcataacctaccattggtaaatacatgcacgggggtttgaccggagggtttatttttttgtgcgcag

upper sequence: GLYMA01G37320.1 (Glycine max), 5'ss of exon 1
lower sequence: EFJ37480 (Selaginella moellendorffii), 5'ss of exon 2
TCTTCGACGGCTACGCTCACCTCTCCTCCGGCCTCTCTTGCGGTCTTGCTGGCCTCTCCGCTGGCATGGCCATTGGCATTGTTGGCGACGCCGGTGTTAGgtattctcactccttttctactctctctttttctttcgaaaaagatgcgtgtagttataattattttcttgcatatggtttggta-tttggttcaaggcca-
||||||| |||||||| || ||||| |||||  |  ||||||| |||||||||||||| ||||| ||||| ||||| |||||||| ||||| || || ||||    |  |     |  | ||   | ||  |  |||||| |     ||  |    |   |    |   |||  |   | |     ||| | ||||  | | 
TCTTCGATGGCTACGCGCATCTCTCTTCCGGATTGGCTTGCGGGCTTGCTGGCCTCTCGGCTGGGATGGCGATTGGAATTGTTGGAGACGCTGGAGTGAGgtcaagtttccaaactctttcttcgttttgctgcttcgaatagttcacgcttgtagacggtcgagtgtctgctgactatctccagctttagctcaa--ctaa

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7796609|gb|AW782006.1|AW782006
EST:     GGCCTCTCCGCTGGCATGGCCATTGGCATTGTTGGCGACGCCGGTGTTAG                         AGCAAATGCCCAACAGCCAAAGCTTTTTGTTGGGATGATTCTCATTCTCAT
genomic: GGCCTCTCCGCTGGCATGGCCATTGGCATTGTTGGCGACGCCGGTGTTAGgtattctcac ... ttttttgtagAGCAAATGCCCAACAGCCAAAGCTTTTTGTTGGGATGATTCTCATTCTCAT
EST: gi|208315229|gb|GE117015.1|GE117015
EST:     GGCCTCTCCGCTGGCATGGCCATTGGCATTGTTGGCGACGCCGGTGTTAG                         AGCAAATGCCCAACAGCCAAAGCTTTTTGTTGGGATGATTCTCATTCTCAT
genomic: GGCCTCTCCGCTGGCATGGCCATTGGCATTGTTGGCGACGCCGGTGTTAGgtattctcac ... ttttttgtagAGCAAATGCCCAACAGCCAAAGCTTTTTGTTGGGATGATTCTCATTCTCAT
EST: gi|9565145|gb|BE474645.1|BE474645
EST:     GGCCTCTCCGCTGGCATGGCCATTGGCATTGTTGGCGACGCCGGTGTTAG                         AGCAAATGCCCAACAGCCAAAGCTTTTTGTTGGGATGATTCTCATTCTCAT
genomic: GGCCTCTCCGCTGGCATGGCCATTGGCATTGTTGGCGACGCCGGTGTTAGgtattctcac ... ttttttgtagAGCAAATGCCCAACAGCCAAAGCTTTTTGTTGGGATGATTCTCATTCTCAT
EST: gi|21888937|gb|BQ742150.1|BQ742150
EST:     GGCCTCTCCGCTGGCATGGACATTGGCATTGTTGGCGACGCCGGTGTTAG                         AGCAAATGCCCAACAGCCAAAGCTTTTTGTTGGGATGATTCTCATTCTCAT
genomic: GGCCTCTCCGCTGGCATGGCCATTGGCATTGTTGGCGACGCCGGTGTTAGgtattctcac ... ttttttgtagAGCAAATGCCCAACAGCCAAAGCTTTTTGTTGGGATGATTCTCATTCTCAT
EST: gi|298164728|gb|HO014373.1|HO014373
EST:     GGCCTCTCCGCTGGCATGGCCATTGGCATTGTTGGCGACGCCGGTGTTAG                         AGCAAATGCCCAACAGCCAAAGCTTTTTG
genomic: GGCCTCTCCGCTGGCATGGCCATTGGCATTGTTGGCGACGCCGGTGTTAGgtattctcac ... ttttttgtagAGCAAATGCCCAACAGCCAAAGCTTTTTG
EST: gi|298185630|gb|HO030843.1|HO030843
EST:     GGCCTCTCCGCTGGCATGGCCATTGGCATTGTTGGCGACGCCGGTGTTAG                         AGCAAATGCCCAACAGCCAAAGCTTTTTGTAGGGATGATTCTCATTCTCAT
genomic: GGCCTCTCCGCTGGCATGGCCATTGGCATTGTTGGCGACGCCGGTGTTAGgtattctcac ... ttttttgtagAGCAAATGCCCAACAGCCAAAGCTTTTTGTTGGGATGATTCTCATTCTCAT
EST: gi|31472094|gb|CD414122.1|CD414122
EST:     GGCCTCTCCGCTGGCATGGCCATTGGCATTGTTGGCGACGCCGGTGTTAG                         AGCAAATGCCCAACAGCCTAAGCTTTTTGTTGGGATGATTCTCATTCTCAT
genomic: GGCCTCTCCGCTGGCATGGCCATTGGCATTGTTGGCGACGCCGGTGTTAGgtattctcac ... ttttttgtagAGCAAATGCCCAACAGCCAAAGCTTTTTGTTGGGATGATTCTCATTCTCAT
EST: gi|15287989|gb|BI471880.1|BI471880
EST:     GGCCTCTCCGCTGGCATGGCCATTGGCATTGTTGGCGACGCCGGTGTTAG                         AGCAAATGCCCAACAGCCAAAGCTTTTTGTTGGGATGATTCTCATTCTCAT
genomic: GGCCTCTCCGCTGGCATGGCCATTGGCATTGTTGGCGACGCCGGTGTTAGgtattctcac ... ttttttgtagAGCAAATGCCCAACAGCCAAAGCTTTTTGTTGGGATGATTCTCATTCTCAT
EST: gi|298172427|gb|HO019467.1|HO019467
EST:     GGCCTCTCCGCTGGCATGGCCATTGGCATTGTTGGCGACGCCGGTGTTAG                         AGCAAATGCCCAACAGCCAAAGCTTTTTGTTGGGATGATTCTCATTCTCAT
genomic: GGCCTCTCCGCTGGCATGGCCATTGGCATTGTTGGCGACGCCGGTGTTAGgtattctcac ... ttttttgtagAGCAAATGCCCAACAGCCAAAGCTTTTTGTTGGGATGATTCTCATTCTCAT
EST: gi|16347399|gb|BI972994.1|BI972994
EST:     GGCCTCTCCGCTGGCATGGCCATTGGCATTGTTGGCGACGCCGGTGTTAG                         AGCAAATGCCCAACAGCCAAAGCTTTTTGTTGGGATGATTCTCATTCTCAT
genomic: GGCCTCTCCGCTGGCATGGCCATTGGCATTGTTGGCGACGCCGGTGTTAGgtattctcac ... ttttttgtagAGCAAATGCCCAACAGCCAAAGCTTTTTGTTGGGATGATTCTCATTCTCAT
EST: gi|15663262|gb|BI700633.1|BI700633
EST:     GGCCTCTCCGCTGGCATGGCCATTGGCATTGTTGGCGACGCCGGTGTTAG                         AGCAAATGCCCAACAGCCAAAGCTTTTTGTTGGGATGATTCTCATTCTCAT
genomic: GGCCTCTCCGCTGGCATGGCCATTGGCATTGTTGGCGACGCCGGTGTTAGgtattctcac ... ttttttgtagAGCAAATGCCCAACAGCCAAAGCTTTTTGTTGGGATGATTCTCATTCTCAT
EST: gi|31460750|gb|CD402778.1|CD402778
EST:     GGCCATTGGCATTGTTGGCGACGCCGGTGTTAG                         AGCAAATGCCCGACAGCCAAAGCTTTTTGTTGGGATGATTCTCATTCTCAT
genomic: GGCCATTGGCATTGTTGGCGACGCCGGTGTTAGgtattctcac ... ttttttgtagAGCAAATGCCCAACAGCCAAAGCTTTTTGTTGGGATGATTCTCATTCTCAT
EST: gi|208063719|gb|GD864631.1|GD864631
EST:     GCGACGCCGGTGTTAG                         AGCAAATGCCCAACAGCCAAAGCTTTTTGTTGGGATGATTCTCATTCTCAT
genomic: GCGACGCCGGTGTTAGgtattctcac ... ttttttgtagAGCAAATGCCCAACAGCCAAAGCTTTTTGTTGGGATGATTCTCATTCTCAT
EST: gi|208072806|gb|GD872407.1|GD872407
EST:     CTCTCCGCTGGCATGGCCATTGGCATTAGTTAGGACGACGCCGGTGTTAG                         AGCAAATGCCCAACAGCCAAAGCTTTTTGTTGGGATGATTCTCATTCTCAT
genomic: CTCTCCGCTGGCATGGCCATTGGCATT-GTT-GG-CGACGCCGGTGTTAGgtattctcac ... ttttttgtagAGCAAATGCCCAACAGCCAAAGCTTTTTGTTGGGATGATTCTCATTCTCAT
EST: gi|208265939|gb|GE061362.1|GE061362
EST:     ATTGTCGGCGACGCCGGTGTTAG                         AGCAAATGCCCAACAGCCAAAGCTTTTTGTTGGGATGATTCTCATTCTCAT
genomic: ATTGTTGGCGACGCCGGTGTTAGgtattctcac ... ttttttgtagAGCAAATGCCCAACAGCCAAAGCTTTTTGTTGGGATGATTCTCATTCTCAT
EST: gi|208269034|gb|GE068167.1|GE068167
EST:     ATTGTCGGCGACGCCGGTGTTAG                         AGCAAATGCCCAACAGCCAAAGCTTTTTGTTGGGATGATTCTCATTCTCAT
genomic: ATTGTTGGCGACGCCGGTGTTAGgtattctcac ... ttttttgtagAGCAAATGCCCAACAGCCAAAGCTTTTTGTTGGGATGATTCTCATTCTCAT
EST: gi|120495377|gb|EH223544.1|EH223544
EST:     GGCCTCTCCGCTGGCATGGCCATTGGCATTGTTGGCGACGCCGGTGTTAG                         AGCAAATGCCCAACAGCCAAAGCTTTTTGTTGGGATGATTCTCATTCTCAT
genomic: GGCCTCTCCGCTGGCATGGCCATTGGCATTGTTGGCGACGCCGGTGTTAGgtattctcac ... ttttttgtagAGCAAATGCCCAACAGCCAAAGCTTTTTGTTGGGATGATTCTCATTCTCAT
EST: gi|57575207|gb|CX548182.1|CX548182
EST:     GGCCTCTCCGCTGGCATGGCCATTGGCATTGTTGGCGACGCCGGTGTTAG                         AGCAAATGCCCAACAGCCAAAGCTTTTTGTTGGGATGATTCTCATTCTCAT
genomic: GGCCTCTCCGCTGGCATGGCCATTGGCATTGTTGGCGACGCCGGTGTTAGgtattctcac ... ttttttgtagAGCAAATGCCCAACAGCCAAAGCTTTTTGTTGGGATGATTCTCATTCTCAT
EST: gi|11412675|gb|BF424686.1|BF424686
EST:     GGCCTCTCCGCTGGCATGGCCATTGGCATTGTTGGCGACGCCGGTGTTAG                         AGCAAATGCCCAACAGCCAAAGCTTTTTGTTGGGATGATTCTCATTCTCAT
genomic: GGCCTCTCCGCTGGCATGGCCATTGGCATTGTTGGCGACGCCGGTGTTAGgtattctcac ... ttttttgtagAGCAAATGCCCAACAGCCAAAGCTTTTTGTTGGGATGATTCTCATTCTCAT
EST: gi|298166887|gb|HO010326.1|HO010326
EST:     GGCCTCTCCGCTGGCATGGCCATTGGCATTGTTGGCGACGCCGGTGTTAG                         AGCAAATGTCCAACAGCCAAAGCTTTTTGTTGGGATGATTCTCATTCTCAT
genomic: GGCCTCTCCGCTGGCATGGCCATTGGCATTGTTGGCGACGCCGGTGTTAGgtattctcac ... ttttttgtagAGCAAATGCCCAACAGCCAAAGCTTTTTGTTGGGATGATTCTCATTCTCAT
EST: gi|298176790|gb|HO023263.1|HO023263
EST:     GGCCTCTCCGCTGGCATGGCCATTGGCATTGTTGGCGACGCCGGTGTTAG                         AGCAAATGCCCAACAGCCAAAGCTTTTTGTTGGGATGATTCTCATTCTCAT
genomic: GGCCTCTCCGCTGGCATGGCCATTGGCATTGTTGGCGACGCCGGTGTTAGgtattctcac ... ttttttgtagAGCAAATGCCCAACAGCCAAAGCTTTTTGTTGGGATGATTCTCATTCTCAT
EST: gi|298184827|gb|HO030040.1|HO030040
EST:     GGCCTCTCCGCTGGCATGGCCATTGGCATTGTTGGCGACGCCGGTGTTAG                         AGCAAATGCCCAACAGCCAAAGCTTTTTGTTGGGATGATTCTCATTCTCAT
genomic: GGCCTCTCCGCTGGCATGGCCATTGGCATTGTTGGCGACGCCGGTGTTAGgtattctcac ... ttttttgtagAGCAAATGCCCAACAGCCAAAGCTTTTTGTTGGGATGATTCTCATTCTCAT
EST: gi|15814670|gb|BI786945.1|BI786945
EST:     GGCCTCTCCGCTGGCATGGCCATTGGCATTGTTGGCGACGCCGGTGTTAG                         AGCAAATGCCCAACAGCCAAAGCTTTTTGTTGGGATGATTCTCATTCTCAT
genomic: GGCCTCTCCGCTGGCATGGCCATTGGCATTGTTGGCGACGCCGGTGTTAGgtattctcac ... ttttttgtagAGCAAATGCCCAACAGCCAAAGCTTTTTGTTGGGATGATTCTCATTCTCAT
EST: gi|13312043|gb|BG405703.1|BG405703
EST:     GGCCTCTCCGCTGGCATGGCCATTGGCATTGTTGGCGACGCCGGTGTTAG                         AGCAAATGCCCAACAGCCAAAGCTTTTTGTTGGGATGATTCTCATTCTCAT
genomic: GGCCTCTCCGCTGGCATGGCCATTGGCATTGTTGGCGACGCCGGTGTTAGgtattctcac ... ttttttgtagAGCAAATGCCCAACAGCCAAAGCTTTTTGTTGGGATGATTCTCATTCTCAT
EST: gi|16105214|gb|BI892954.1|BI892954
EST:     GGCCTCTCCGCTGGCATGGCCATTGGCATTGTTGGCGACGCCGGTGTTAG                         AGCAAATGCCCAACAGCCAAAGCTTTTTGTTGGGATGATTCTCATTCTCAT
genomic: GGCCTCTCCGCTGGCATGGCCATTGGCATTGTTGGCGACGCCGGTGTTAGgtattctcac ... ttttttgtagAGCAAATGCCCAACAGCCAAAGCTTTTTGTTGGGATGATTCTCATTCTCAT
EST: gi|5677095|gb|AI938225.1|AI938225
EST:     GGCCTCTCCGCTGGCATGGCCATTGGCATTGTTGGCGACGCCGGTGTTAG                         AGCAAATGCCCAACAGCCAAAGCTTTTTGTTGGGATGATTCTCATTCTCAT
genomic: GGCCTCTCCGCTGGCATGGCCATTGGCATTGTTGGCGACGCCGGTGTTAGgtattctcac ... ttttttgtagAGCAAATGCCCAACAGCCAAAGCTTTTTGTTGGGATGATTCTCATTCTCAT
EST: gi|298195107|gb|HO043635.1|HO043635
EST:     GGCCTCTCCGCTGGCATGGCCATTGGCATTGTTGGCGACGCCGGTGTTAG                         AGCAAATGCCCAACAGCCAAAGCTTTTTGTTGGGATGATTCTCATTCTCAT
genomic: GGCCTCTCCGCTGGCATGGCCATTGGCATTGTTGGCGACGCCGGTGTTAGgtattctcac ... ttttttgtagAGCAAATGCCCAACAGCCAAAGCTTTTTGTTGGGATGATTCTCATTCTCAT
EST: gi|298183759|gb|HO028972.1|HO028972
EST:     GTCCTCTCCGCTGGCATGGCCATTGGCATTGTTGGCGACGCCGGTGTTAG                         AGCAAATGCCCAACAGCCAAAGCTTTTTGTTGGGATGATTCTCATTCTCAT
genomic: GGCCTCTCCGCTGGCATGGCCATTGGCATTGTTGGCGACGCCGGTGTTAGgtattctcac ... ttttttgtagAGCAAATGCCCAACAGCCAAAGCTTTTTGTTGGGATGATTCTCATTCTCAT
EST: gi|10235998|gb|BE804886.1|BE804886
EST:     GGCCTCTCCGCTGGCATGGCCATTGGCATTGTTGGCGACGCCGGTGTTAG                         AGCAAATGCCCAACAGCCAAAGCTTTTTGTTGGGATGATTCTCATTCTCAT
genomic: GGCCTCTCCGCTGGCATGGCCATTGGCATTGTTGGCGACGCCGGTGTTAGgtattctcac ... ttttttgtagAGCAAATGCCCAACAGCCAAAGCTTTTTGTTGGGATGATTCTCATTCTCAT
EST: gi|298174859|gb|HO014776.1|HO014776
EST:     GGCCTCTCCGCTGGCATGGCCATTGGCATTGTTGGCGACGCCGGTGTTAG                         AGCAAATGCCCAACAGCCAAAGCTTTTTGTTGGGATGATTCTCATTCTCAT
genomic: GGCCTCTCCGCTGGCATGGCCATTGGCATTGTTGGCGACGCCGGTGTTAGgtattctcac ... ttttttgtagAGCAAATGCCCAACAGCCAAAGCTTTTTGTTGGGATGATTCTCATTCTCAT
EST: gi|6848268|gb|AW350558.1|AW350558
EST:     GGCCTCTCCGCTGGCATGGCCATTGGCATTGTTGGCGACGCCGGTGTTAG                         AGCAAATGCCCAACAGCCAAAGCTTTTTGTTGGGATGATTCTCATTCTCAT
genomic: GGCCTCTCCGCTGGCATGGCCATTGGCATTGTTGGCGACGCCGGTGTTAGgtattctcac ... ttttttgtagAGCAAATGCCCAACAGCCAAAGCTTTTTGTTGGGATGATTCTCATTCTCAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCTTCGACGGCTACGCTCACCTCTCCTCCGGCCTCTCTTGCGGTCTTGCTGGCCTCTCCGCTGGCATGGCCATTGGCATTGTTGGCGACGCCGGTGTTAGgtattctcactccttttctactctctctttttctttcgaaaaagatgcgtgtagttataattattttcttgcatatggtttggtatttggttcaaggcca

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctctctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaaaaga