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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACCCGCTCTTCCCACCACCGTCGAAGTCGATTTGGGTAATCGGAGCTATCCCATTTACATCGGATCCGGGTTACTAAACCAACCCGACTATCTCCAGAGgttcaacaattcaatttctttaacttttgttttctctttattttttcatgttataatttccaatatgtctgtatgtggatttatacttactcaattttca...

Basic information

species Glycine max
transcript GLYMA01G36890.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213597037|gb|DB966346.1|DB966346
EST:     CCCATTTACATCGGATCCGGGTTACTAAACCAACCCGACTATCTCCAGAG                         GCACGTGCATGGAAAGAGGGTCCTAGTTGTAACTAACAAAACGGTTGCGCC
genomic: CCCATTTACATCGGATCCGGGTTACTAAACCAACCCGACTATCTCCAGAGgttcaacaat ... gttgcaatagGCACGTGCATGGAAAGAGGGTCCTAGTTGTAACTAACAAAACGGTTGCGCC
EST: gi|192325488|gb|FK018414.1|FK018414
EST:     CCCATTTACATCGGATCCGGGTTACTAAACCAACCCGACTATCTCCAGAG                         GCACGTGCATGGAAAGAGGGTCCTAGTTGTAACTAACAAAACGGTTGCGCC
genomic: CCCATTTACATCGGATCCGGGTTACTAAACCAACCCGACTATCTCCAGAGgttcaacaat ... gttgcaatagGCACGTGCATGGAAAGAGGGTCCTAGTTGTAACTAACAAAACGGTTGCGCC
EST: gi|151396219|gb|EV266096.1|EV266096
EST:     CCCATTTACATCGGATCCGGGTTACTAAACCAACCCGACTATCTCCAGAG                         GCACGTGCATGGAAAGAGGGTCCTAGTTGTAACTAACAAAACGGTTGCGCC
genomic: CCCATTTACATCGGATCCGGGTTACTAAACCAACCCGACTATCTCCAGAGgttcaacaat ... gttgcaatagGCACGTGCATGGAAAGAGGGTCCTAGTTGTAACTAACAAAACGGTTGCGCC
EST: gi|27426317|gb|CA937837.1|CA937837
EST:     CCCATTTACATCGGATCCGGGTTACTAAACCAACCCGACTATCTCCAGAG                         GCACGTGCATGGAAAGAGGGTCCTAGTTGTAACTAACAAAACGGTTGCGCC
genomic: CCCATTTACATCGGATCCGGGTTACTAAACCAACCCGACTATCTCCAGAGgttcaacaat ... gttgcaatagGCACGTGCATGGAAAGAGGGTCCTAGTTGTAACTAACAAAACGGTTGCGCC
EST: gi|298179441|gb|HO027912.1|HO027912
EST:     CCCATTTACATCGGATCCGGGTAACTAAACCAACCCGACTATCTCCAGAG                         GCACGTGCATGGAAAGAGGGTCCTAGTTGTAACTAACAAAACGGTTGCGCC
genomic: CCCATTTACATCGGATCCGGGTTACTAAACCAACCCGACTATCTCCAGAGgttcaacaat ... gttgcaatagGCACGTGCATGGAAAGAGGGTCCTAGTTGTAACTAACAAAACGGTTGCGCC
EST: gi|213603653|gb|DB966795.1|DB966795
EST:     CCCATTTACATCGGATCCGGGTTACTAAACCAACCCGACTATCTCCAGAG                         GCACGTGCATGGAAAGAGGGTCCTAGTTGTAACTAACAAAACGGT
genomic: CCCATTTACATCGGATCCGGGTTACTAAACCAACCCGACTATCTCCAGAGgttcaacaat ... gttgcaatagGCACGTGCATGGAAAGAGGGTCCTAGTTGTAACTAACAAAACGGT
EST: gi|151407393|gb|EV277208.1|EV277208
EST:     CCCATTTACATCGGATCCGGGTTACTAAACCAACCCGACTATCTCCAGAG                         GCACGTGCATGGAAAGAGGGTCCTAGTTGTAACTAACAAAACGGTTGCGCC
genomic: CCCATTTACATCGGATCCGGGTTACTAAACCAACCCGACTATCTCCAGAGgttcaacaat ... gttgcaatagGCACGTGCATGGAAAGAGGGTCCTAGTTGTAACTAACAAAACGGTTGCGCC
EST: gi|15814282|gb|BI786557.1|BI786557
EST:     CCCATTTACATCGGATCCGGGTTACTAAACCAACCCGACTATCTCCAGAG                         GCACGTGCATGGAAAGAGGGTCCTAGTTGTAACTAACAAAACGGTTGCGCC
genomic: CCCATTTACATCGGATCCGGGTTACTAAACCAACCCGACTATCTCCAGAGgttcaacaat ... gttgcaatagGCACGTGCATGGAAAGAGGGTCCTAGTTGTAACTAACAAAACGGTTGCGCC
EST: gi|193602019|gb|FK559248.1|FK559248
EST:     CCCATTTACATCGGACCCGGGTTACTAAACCAACCCGACTATCTCCAGAG                         GCATGTGCATGGAAAGAGGGTCCTAGTTGTAACTAACAAAACGGTTGCGCC
genomic: CCCATTTACATCGGATCCGGGTTACTAAACCAACCCGACTATCTCCAGAGgttcaacaat ... gttgcaatagGCACGTGCATGGAAAGAGGGTCCTAGTTGTAACTAACAAAACGGTTGCGCC
EST: gi|192333519|gb|FK024048.1|FK024048
EST:     CCCATTTACATCGGATCCGGGTTACTAAACCAACCCGACTATCTCCAGAG                         GCACGTGCATGGAAAGAGGGTCCTAGTTGTAACTAACAAAACGGTTGCGCC
genomic: CCCATTTACATCGGATCCGGGTTACTAAACCAACCCGACTATCTCCAGAGgttcaacaat ... gttgcaatagGCACGTGCATGGAAAGAGGGTCCTAGTTGTAACTAACAAAACGGTTGCGCC
EST: gi|10232567|gb|BE801455.1|BE801455
EST:     CCCATTTACATCGGATCCGGGTTACTAAACCAACCCGACTATCTCCAGAG                         GCACGTGCATGGAAAGAGGGTCCTAGTTGTAACTAACAAAACGGTTGCGCC
genomic: CCCATTTACATCGGATCCGGGTTACTAAACCAACCCGACTATCTCCAGAGgttcaacaat ... gttgcaatagGCACGTGCATGGAAAGAGGGTCCTAGTTGTAACTAACAAAACGGTTGCGCC
EST: gi|209726584|gb|BW666502.1|BW666502
EST:     CCCATTTACATCGGATCCGGGTTACTAAACCAACCCGACTATCTCCAGAG                         GCACGTGCATGGAAAGAGGGTCCTAGTTGTAACTAACAAAACGGTTGCGCC
genomic: CCCATTTACATCGGATCCGGGTTACTAAACCAACCCGACTATCTCCAGAGgttcaacaat ... gttgcaatagGCACGTGCATGGAAAGAGGGTCCTAGTTGTAACTAACAAAACGGTTGCGCC
EST: gi|10845199|gb|BF068360.1|BF068360
EST:     CCCATTTACATCGGATCCGGGTTACTAAACCAACCCGACTATCTCCAGAG                         GCACGTGCATGGAAAGAGGGTCCTAGTTGTAACTAACAAAACGGTTGCGCC
genomic: CCCATTTACATCGGATCCGGGTTACTAAACCAACCCGACTATCTCCAGAGgttcaacaat ... gttgcaatagGCACGTGCATGGAAAGAGGGTCCTAGTTGTAACTAACAAAACGGTTGCGCC
EST: gi|151410909|gb|EV280724.1|EV280724
EST:     CCCATTTACATCGGATCCGGGTTACTAAACCAACCCGACTATCTCCAGAG                         GCACGTGCATGGAAAGAGGGTCCTAGTTGTAACTAACAAAACGGTTGCGCC
genomic: CCCATTTACATCGGATCCGGGTTACTAAACCAACCCGACTATCTCCAGAGgttcaacaat ... gttgcaatagGCACGTGCATGGAAAGAGGGTCCTAGTTGTAACTAACAAAACGGTTGCGCC