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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTCGCCGATCAGTTCGCCGCCGGCAGGTACATAGCGCAGAGAAAGTTGGGTTGGGGTCAGTTTTCCACCGTGTGGCTCGCTTACGATACTAAAACTGAGgtatgtttcataattcatacccatcttccttttctttttctttttcttttgtcgtttttttaattgttttcttcaaaagatgtcgttttgagactacccg...

Basic information

species Glycine max
transcript GLYMA01G36260.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G36260.1 (Glycine max), 5'ss of exon 1
lower sequence: AT4G35500.1 (Arabidopsis thaliana), 5'ss of exon 1
AGTCGCCGATCAGTTCGCCGCCGGCAGGTACATAGCGCAGAGAAAGTTGGGTTGGGGTCAGTTTTCCACCGTGTGGCTCGCTTACGATACTAAAACTGAGgtatgtttcataattcatacccatcttccttttctttttctttttcttttgtcgtttttttaattgttttcttcaaaagat-gtcgttttgagactacccg
  ||| |||||  ||  |||  ||  | ||||| || ||||||||| | ||||||||||| || |||||||| ||||| || ||||||||    ||    ||| |  ||    ||| |  ||   || |||   || || | || ||||  ||||  || |   | ||  | ||||    |  | | ||| |   | |   
GATCGGCGATCCTTTTTCCGGTGGTCGTTACATCGCTCAGAGAAAGCTTGGTTGGGGTCAATTCTCCACCGTTTGGCTTGCCTACGATACGCTCACCTCTgtacgcatctctcttcttttcc-catttcttcgattgttttgttgctttgatcgtaattcttcattttgacatcaaccattcattggtttcatttttcatc
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254344273|gb|GR851076.1|GR851076
EST:     CCGTGTGGCTCGCTTACGATACTAAAACTGAG                         TCATATGTTGCTCTCAAGATCCAGAAAAGTGCAGCTCAGTTTGCTCAGGCT
genomic: CCGTGTGGCTCGCTTACGATACTAAAACTGAGgtatgtttca ... tggttttcagTCATATGTTGCTCTCAAGATCCAGAAAAGTGCAGCTCAGTTTGCTCAGGCT
EST: gi|193319668|gb|FK284713.1|FK284713
EST:     GTTGGG-TCAGTTTTCCACCGTGTGGCTCGCTTACGATACTAAAACTGAG                         TCATATGTTGCT
genomic: GTTGGGGTCAGTTTTCCACCGTGTGGCTCGCTTACGATACTAAAACTGAGgtatgtttca ... tggttttcagTCATATGTTGCT