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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAGCCTATGTATTTTTCAGTTCACCAATCCCAAAGGAACTTGTAAACCACATCAAGTGTGATACAAGTGTCTTACCCCGCATAGGTGCACTGAGAGAGgtcaagattttgttgtccctttctatctagttgttatcagcaagtggtcaacatcaaattgtttttattgaaattacttttggttctgttttgcag

Basic information

species Glycine max
transcript GLYMA01G34340.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G34340.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv15s0048g00970.t01 (Vitis vinifera), 5'ss of exon 5
AGAGCCTATGTATTTTTCAGTTCACCAATCCCAAAGGAACTTGTAAACCACATCAAGTGTGATACAAGTGTCTTACCCCGCATAGGTGCACTGAGAGAGgtcaagattttgttgtccctttctatctagttgttatcagcaagtggtcaacatcaaattgtttttattgaaattacttttggttctgttttgcag-----------------------------
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--AGCATTTGTATTCTTTAGTTCCCCTATTCCAAAAGATCTGGTTAATCACATCAAGAGTGATACAAGTGTTCTACCCCGCATAGGTGCATTAAGAGAGgttaaaaattatcattcttcttgtaaagattcttgtatattaaatagtt--tatcaatttccagtt-ttgagatttttttttgttctatttgtgacattcttcttgtttgcttggtaacatccag