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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTTTTGGGTCTCTCTCATTCTTCACCCGCTCAGACGCAGAGGAGCAGAAGCCTAAGCCTCAAACATGgttagctcttcgtcttgaaactaattgcattcaacttatcattttgcttttactttttttttccttgttttcgtttttatcattaaatggaaatgaaagg...

Basic information

species Glycine max
transcript GLYMA01G31270.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298173349|gb|HO016685.1|HO016685
EST:     GCTCAGACGCAGAGGAGCAGAAGCCTAAGCCTCAAACATG                         GCGAGAGGGTTAAAGAAACACCTGAAGAGGCTCAATGCTCCAAAACATTGG
genomic: GCTCAGACGCAGAGGAGCAGAAGCCTAAGCCTCAAACATGgttagctctt ... tgtatttcagGCGAGAGGGTTAAAGAAACACCTGAAGAGGCTCAATGCTCCAAAACATTGG
EST: gi|19054282|gb|BM732949.1|BM732949
EST:     CAGAGGAGCAGAAGCCTAAGCCTCAAACATG                         GCGAGAGGGTTAAAGAAACACCTGAAGAGGCTCAATGCTCCAAAACATTGG
genomic: CAGAGGAGCAGAAGCCTAAGCCTCAAACATGgttagctctt ... tgtatttcagGCGAGAGGGTTAAAGAAACACCTGAAGAGGCTCAATGCTCCAAAACATTGG
EST: gi|13788286|gb|BG650878.1|BG650878
EST:     TTCTTCACCCGCTCAGACGCAGAGGAGCAGAAGCCTAAGCCTCAAACATG                         GCGAGAGGGTTAAAGAAACACCTGAAGAGGCTCAATGCTCCAAAACATTGG
genomic: TTCTTCACCCGCTCAGACGCAGAGGAGCAGAAGCCTAAGCCTCAAACATGgttagctctt ... tgtatttcagGCGAGAGGGTTAAAGAAACACCTGAAGAGGCTCAATGCTCCAAAACATTGG
EST: gi|208182160|gb|GD980607.1|GD980607
EST:     TTCTTCACCCGCTCAGACGCAGAGGAGCAGAAGCCTAAGCCTCAAACATG                         GCGAGAGGGTTAAAGAAACACCTGAAGAGGCTCAATGCTCCAAAACATTGG
genomic: TTCTTCACCCGCTCAGACGCAGAGGAGCAGAAGCCTAAGCCTCAAACATGgttagctctt ... tgtatttcagGCGAGAGGGTTAAAGAAACACCTGAAGAGGCTCAATGCTCCAAAACATTGG
EST: gi|17022544|gb|BM093578.1|BM093578
EST:     CTTCACCCGCTCAGACGCAGAGGAGCAGAAGCCTAAGCCTCAAACATG                         GCGAGAGGGTTAAAGAAACACCTGAAGAGGCTCAATGCTCCAAAACATTGG
genomic: CTTCACCCGCTCAGACGCAGAGGAGCAGAAGCCTAAGCCTCAAACATGgttagctctt ... tgtatttcagGCGAGAGGGTTAAAGAAACACCTGAAGAGGCTCAATGCTCCAAAACATTGG
EST: gi|21888286|gb|BQ741499.1|BQ741499
EST:     GAGGAGCAGAAGCCTAAGCCTCAAACATG                         GCGAGAGGGTTAAAGAAACACCTGAAGAGGCTCAATGCTCCAAAACATTGG
genomic: GAGGAGCAGAAGCCTAAGCCTCAAACATGgttagctctt ... tgtatttcagGCGAGAGGGTTAAAGAAACACCTGAAGAGGCTCAATGCTCCAAAACATTGG
EST: gi|213604822|gb|DB956135.1|DB956135
EST:     TTCTTCACCCGCTCAGACGCAGAGGAGCAGAAGCCTAAGCCTCAAACATG                         GCGAGAGGGTTAAAGAAACACCTGAAGAGGCTCAATGCTCCAAAACATTGG
genomic: TTCTTCACCCGCTCAGACGCAGAGGAGCAGAAGCCTAAGCCTCAAACATGgttagctctt ... tgtatttcagGCGAGAGGGTTAAAGAAACACCTGAAGAGGCTCAATGCTCCAAAACATTGG
EST: gi|8827979|gb|BE211709.1|BE211709
EST:     GCAGAGGAGCAGAAGCCTAAGCCTCAAACATG                         GCGAGAGGGTTAAAGAAACACCTGAAGAGGCTCAATGCTCCAAAACATTGG
genomic: GCAGAGGAGCAGAAGCCTAAGCCTCAAACATGgttagctctt ... tgtatttcagGCGAGAGGGTTAAAGAAACACCTGAAGAGGCTCAATGCTCCAAAACATTGG
EST: gi|298169248|gb|HO020608.1|HO020608
EST:     TTCTTCACCCGCTCAGACGCAGAGGAGCAGAAGCCTAAGCCTCAAACATG                         GCGAGAGGGTTAAAGAAACACCTGAAGAGGCTCAATGCTCCAAAACATTGG
genomic: TTCTTCACCCGCTCAGACGCAGAGGAGCAGAAGCCTAAGCCTCAAACATGgttagctctt ... tgtatttcagGCGAGAGGGTTAAAGAAACACCTGAAGAGGCTCAATGCTCCAAAACATTGG
EST: gi|298182749|gb|HO031484.1|HO031484
EST:     TTCTTCACCCGCTCAGACGCAGAGGAGCAGAAGCCTAAGCCTCAAACATG                         GCGAGAGGGTTAAAGAAACACCTGAAGAGGCTCAATGCTCCAAAACATTGG
genomic: TTCTTCACCCGCTCAGACGCAGAGGAGCAGAAGCCTAAGCCTCAAACATGgttagctctt ... tgtatttcagGCGAGAGGGTTAAAGAAACACCTGAAGAGGCTCAATGCTCCAAAACATTGG
EST: gi|26268188|gb|CA819251.1|CA819251
EST:     TTCTTCACCCGCTCAGACGCAGAGGAGCAGAAGCCTAAGCCTCAAACATG                         GCGAGAGGGTTAAAGAAACACCTGAAGAGGCTCAATGCTCCAAAACATTGG
genomic: TTCTTCACCCGCTCAGACGCAGAGGAGCAGAAGCCTAAGCCTCAAACATGgttagctctt ... tgtatttcagGCGAGAGGGTTAAAGAAACACCTGAAGAGGCTCAATGCTCCAAAACATTGG
EST: gi|18041325|gb|BM309619.1|BM309619
EST:     AGACGCAGAGGAGCAGAAGCCTAAGCCTCAAACATG                         GCGAGAGGGTTAAAGAAACACCTGAAGAGGCTCAATGCTCCAAAACATTGG
genomic: AGACGCAGAGGAGCAGAAGCCTAAGCCTCAAACATGgttagctctt ... tgtatttcagGCGAGAGGGTTAAAGAAACACCTGAAGAGGCTCAATGCTCCAAAACATTGG
EST: gi|19053906|gb|BM732573.1|BM732573
EST:     CGCAGAGGAGCAGAAGCCTAAGCCTCAAACAAG                         GCGAGAGGGTTAAAGAAACACCTGAAGAGGCTCAATGCTCCAAAACATTGG
genomic: CGCAGAGGAGCAGAAGCCTAAGCCTCAAACATGgttagctctt ... tgtatttcagGCGAGAGGGTTAAAGAAACACCTGAAGAGGCTCAATGCTCCAAAACATTGG
EST: gi|209720298|gb|BW669258.1|BW669258
EST:     TTCTTCACCCGCTCAGACGCAGAGGAGCAGAAGCCTAAGCCTCAAACATG                         GCGAGAGGGTTAAAGAAACACCTGAAGAGGCTCAATGCTCCAAAACATTGG
genomic: TTCTTCACCCGCTCAGACGCAGAGGAGCAGAAGCCTAAGCCTCAAACATGgttagctctt ... tgtatttcagGCGAGAGGGTTAAAGAAACACCTGAAGAGGCTCAATGCTCCAAAACATTGG
EST: gi|8827265|gb|BE210995.1|BE210995
EST:     TTCTTCACCCGCTCAGACGCAGAGGAGCAGAAGCCTAAGCCTCAAACATG                         GCGAGAGGGTTAAAGAAACACCTGAAGAGGCTCAATGCTCCAAAACATTGG
genomic: TTCTTCACCCGCTCAGACGCAGAGGAGCAGAAGCCTAAGCCTCAAACATGgttagctctt ... tgtatttcagGCGAGAGGGTTAAAGAAACACCTGAAGAGGCTCAATGCTCCAAAACATTGG
EST: gi|298188320|gb|HO035013.1|HO035013
EST:     GCTCAGACGCAGAGGAGCAGAAGCCTAAGCCTCAAACATG                         GCGAGAGGGTTAAAGAAACACCTGAAGAGGCTCAATGCTCCAAAACATTGG
genomic: GCTCAGACGCAGAGGAGCAGAAGCCTAAGCCTCAAACATGgttagctctt ... tgtatttcagGCGAGAGGGTTAAAGAAACACCTGAAGAGGCTCAATGCTCCAAAACATTGG
EST: gi|298188025|gb|HO031982.1|HO031982
EST:     AGACGCAGAGGAGCAGAAGCCTAAGCCTCAAACATG                         GCGAGAGGGTTAAAGAAACACCTGAAGAGGCTCAATGCTCCAAAACATTGG
genomic: AGACGCAGAGGAGCAGAAGCCTAAGCCTCAAACATGgttagctctt ... tgtatttcagGCGAGAGGGTTAAAGAAACACCTGAAGAGGCTCAATGCTCCAAAACATTGG
EST: gi|192298439|gb|FG988455.1|FG988455
EST:     TTCTTCACCCGCTCAGACGCAGAGGAGCAGAAGCCTAAGCCTCAAACATG                         GCGAGAGGGTTAAAGAAACACCTGAAGAGGCTCAATGCTCCAAAACATTGG
genomic: TTCTTCACCCGCTCAGACGCAGAGGAGCAGAAGCCTAAGCCTCAAACATGgttagctctt ... tgtatttcagGCGAGAGGGTTAAAGAAACACCTGAAGAGGCTCAATGCTCCAAAACATTGG
EST: gi|14259674|gb|BG882582.1|BG882582
EST:     GCAGAAGCCTAAGCCTCAAACATG                         GCGAGAGGGTTAAAGAAACACCTGAAGAGGCTCAATGCTCCAAAACATTGG
genomic: GCAGAAGCCTAAGCCTCAAACATGgttagctctt ... tgtatttcagGCGAGAGGGTTAAAGAAACACCTGAAGAGGCTCAATGCTCCAAAACATTGG
EST: gi|192332454|gb|FK024215.1|FK024215
EST:     TTCTTCACCCGCTCAGACGCAGAGGAGCAGAAGCCTAAGCCTCAAACATG                         GCGAGAGGGTTAAAGAAACACCTGAAGAGGCTCAATGCTCCAAAACATTGG
genomic: TTCTTCACCCGCTCAGACGCAGAGGAGCAGAAGCCTAAGCCTCAAACATGgttagctctt ... tgtatttcagGCGAGAGGGTTAAAGAAACACCTGAAGAGGCTCAATGCTCCAAAACATTGG
EST: gi|298190414|gb|HO032535.1|HO032535
EST:     TTCTTCACCCGCTCAGACGCAGAGGAGCAGAAGCCTAAGCCTCAAACATG                         GCGAGAGGGTTAAAGAAACACCTGAAGAGGCTCAATGCTCCAAAACATTGG
genomic: TTCTTCACCCGCTCAGACGCAGAGGAGCAGAAGCCTAAGCCTCAAACATGgttagctctt ... tgtatttcagGCGAGAGGGTTAAAGAAACACCTGAAGAGGCTCAATGCTCCAAAACATTGG
EST: gi|213618374|gb|DB969372.1|DB969372
EST:     AGACGCAGAGGAGCAGAAGCCTAAGCCTCAAACATG                         GCGAGAGGGTTAAAGAAACACCTGAAGAGGCTCAATGCTCCAAAACATTGG
genomic: AGACGCAGAGGAGCAGAAGCCTAAGCCTCAAACATGgttagctctt ... tgtatttcagGCGAGAGGGTTAAAGAAACACCTGAAGAGGCTCAATGCTCCAAAACATTGG
EST: gi|13481264|gb|BG510607.1|BG510607
EST:     CAGAAGCCTAAGCCTCAAACATG                         GCGAGAGGGTTAAAGAAACACCTGAAGAGGCTCAATGCTCCAAAACATTGG
genomic: CAGAAGCCTAAGCCTCAAACATGgttagctctt ... tgtatttcagGCGAGAGGGTTAAAGAAACACCTGAAGAGGCTCAATGCTCCAAAACATTGG
EST: gi|15813058|gb|BI785333.1|BI785333
EST:     TTCTTCACCCGCTCAGACGCAGAGGAGCAGAAGCCTAAGCCTCAAACATG                         GCGAGAGGGTTAAAGAAACACCTGAAGAGGCTCAATGCTCCAAAACATTGG
genomic: TTCTTCACCCGCTCAGACGCAGAGGAGCAGAAGCCTAAGCCTCAAACATGgttagctctt ... tgtatttcagGCGAGAGGGTTAAAGAAACACCTGAAGAGGCTCAATGCTCCAAAACATTGG
EST: gi|192298477|gb|FG988478.1|FG988478
EST:     TTCTTCACCCGCTCAGACGCAGAGGAGCAGAAGCCTAAGCCTCAAACATG                         GCGAGAGGGTTAAAGAAACACCTGAAGAGGCTCAATGCTCCAAAACATTGG
genomic: TTCTTCACCCGCTCAGACGCAGAGGAGCAGAAGCCTAAGCCTCAAACATGgttagctctt ... tgtatttcagGCGAGAGGGTTAAAGAAACACCTGAAGAGGCTCAATGCTCCAAAACATTGG
EST: gi|298174877|gb|HO014794.1|HO014794
EST:     TTCTTCACCCGCTCAGACGCAGAGGAGCAGAAGCCTAAGCCTCAAACATG                         GCGAGAGGGTTAAAGAAACACCTGAAGAGGCTCAATGCTCCAAAACATTGG
genomic: TTCTTCACCCGCTCAGACGCAGAGGAGCAGAAGCCTAAGCCTCAAACATGgttagctctt ... tgtatttcagGCGAGAGGGTTAAAGAAACACCTGAAGAGGCTCAATGCTCCAAAACATTGG
EST: gi|298194963|gb|HO043435.1|HO043435
EST:     TTCTTCACCCGCTCAGACGCAGAGGAGCAGAAGCCTAAGCCTCAAACATG                         GCGAGAGGGTTAAAGAAACACCTGAAGAGGCTCAATGCTCCAAAACATTGG
genomic: TTCTTCACCCGCTCAGACGCAGAGGAGCAGAAGCCTAAGCCTCAAACATGgttagctctt ... tgtatttcagGCGAGAGGGTTAAAGAAACACCTGAAGAGGCTCAATGCTCCAAAACATTGG
EST: gi|16348683|gb|BI974269.1|BI974269
EST:     TTCTTCACCCGCTCAGACGCAGAGGAGCAGAAGCCTAAGCCTCAAACATG                         GCGAGAGGGTTAAAGAAACACCTGAAGAGGCTCAATGCTCCAAAACATTGG
genomic: TTCTTCACCCGCTCAGACGCAGAGGAGCAGAAGCCTAAGCCTCAAACATGgttagctctt ... tgtatttcagGCGAGAGGGTTAAAGAAACACCTGAAGAGGCTCAATGCTCCAAAACATTGG
EST: gi|298197068|gb|HO041811.1|HO041811
EST:     GCTCAGACGCAGAGGAGCAGAAGCCTAAGCCTCAAACATG                         GCGAGAGGGTTAAAGAAACACCTGAAGAGGCTCAATGCTCCAAAACATTGG
genomic: GCTCAGACGCAGAGGAGCAGAAGCCTAAGCCTCAAACATGgttagctctt ... tgtatttcagGCGAGAGGGTTAAAGAAACACCTGAAGAGGCTCAATGCTCCAAAACATTGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGTTTTGGGTCTCTCTCATTCTTCACCCGCTCAGACGCAGAGGAGCAGAAGCCTAAGCCTCAAACATGgttagctcttcgtcttgaaactaattgcattcaacttatcattttgcttttactttttttttccttgttttcgtttttatcattaaatggaaatgaaagg

- - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - -  GAGGAG
- - - - - - - - - - - - - - - - - - - -  GGAGCA
- - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaatgaaa