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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCATGAAGGACCTCTGGCTCGCAATTTACATCCTCGACGCCGTCCTCGTCTTCTTCGTTATCCCCTTTGCCATGTTCTACTACGAAGGCGACCAGGACAAgtaagtgtatgtcgtggtgcttttaatttgatgtttttttttttttgtttttaatttttgtaatcatatactgaaattgaacgaaccagacgttggtccg...

Basic information

species Glycine max
transcript GLYMA01G30400.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G30400.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os06g03760.2 (Oryza sativa), 5'ss of exon 1
CCATGAAGGACCTCTGGCTCGCAATTTACATCCTCGACGCCGTCCTCGTCTTCTTCGTTATCCCCTTTGCCATGTTCTACTACGAAGGCGACCAGGACAAgtaagt-gtatgtcgtggtgcttttaatttgatgtttttttttttttgtttttaat-ttttgtaatcatatactgaaattgaacgaa-ccagacgttggtccg--------
||||||||  ||||||||||||  | ||||||  ||||||||||||||||||| |||| |||||||| ||||||||||||||||| |||||||||||||||||||| ||||          ||  | | |    | | |    ||  |  | |  |  |      |||   | ||   ||||  | | ||    |||| | |         
CCATGAAGACCCTCTGGCTCGCCGTCTACATCGCCGACGCCGTCCTCGTCTTCCTCGTCATCCCCTTCGCCATGTTCTACTACGAGGGCGACCAGGACAAgtaagtagtatacatatacatttccactctttcctctatcccattgcgcatctgctgctaaactctcactgaatgttgttgattggatccgtgtgttgttgcttcctgcag

upper sequence: GLYMA01G30400.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM5G871262_T02 (Zea mays), 5'ss of exon 1
CCATGAAGGACCTCTGGCTCGCAATTTACATCCTCGACGCCGTCCTCGTCTTCTTCGTTATCCCCTTTGCCATGTTCTACTACGAAGGCGACCAGGACAAgtaagtgtatg----tcgtggtgcttttaatttgatgtttttt-tttttttgtttttaatttttgtaatcatatactgaaattgaacgaaccagacgttggtccg
|||||| |   ||||||||||   |||||||| | |||||||||||||||||| |||| |||||||| || |||||||||||||| ||||||||||||||||||    |      |||  ||     ||  ||    | ||   |   |  | |  | ||||       | |   ||| |                         
CCATGAGGACGCTCTGGCTCGTCGTTTACATCGTTGACGCCGTCCTCGTCTTCCTCGTCATCCCCTTCGCAATGTTCTACTACGAGGGCGACCAGGACAAgtaacctcacccccctcgctgtttccctaccttctcttcttccatccgtccgctgatgatttggacccgccttccctgcag------------------------

upper sequence: GLYMA01G30400.1 (Glycine max), 5'ss of exon 1
lower sequence: AT3G08930.1 (Arabidopsis thaliana), 5'ss of exon 1
CCATGAAGGACCTCTGGCTCGCAATTTACATCCTCGACGCCGTCCTCGTCTTCTTCGTTATCCCCTTTGCCATGTTCTACTACGAAGGCGACCAGGACAAgtaagt-gtatgtcgtggtgcttttaatttgatgtttttttttttttgtt--tttaatttttgtaatcatatactgaaattgaacgaaccagacgttggtccg
|||||||||| || ||||| || ||||| ||| | |||||  | ||||| ||||| || |||||||| || ||||| | ||| |||||||||||||||||||  || |  ||  |   |  |  ||  |  ||||| |   ||||  |||  |  |||  |  | |  || |  ||   ||          |   ||   | |
CCATGAAGGATCTTTGGCTTGCTATTTATATCGTGGACGCTATTCTCGTGTTCTTTGTCATCCCCTTCGCAATGTTTTTCTATGAAGGCGACCAGGACAAgttcgtagcttgatgaaattttagtatctctatgttgtaagttttgagttaatcgaatactgatgacaatttg-tgggctttttttctttcgttttttcacag

upper sequence: GLYMA01G30400.1 (Glycine max), 5'ss of exon 1
lower sequence: AT5G01460.1 (Arabidopsis thaliana), 5'ss of exon 1
CCATGAAGGACCTCTGGCTCGCAATTTACATCCTCGACGCCGTCCTCGTCTTCTTCGTTATCCCCTTTGCCATGTTCTACTACGAAGGCGACCAGGACAAgtaagtgtatgtcgtggtgcttttaatttgatgtttttttttttttgtttttaatttttgtaatcatatactgaaattgaacgaaccagacgttggtccg---
| |||||||| || ||||| ||  |||||||  | ||||| || || ||||||||| | |||||||| || ||||| | ||| |||||||||||||||||||  || | |  |  | |  ||||  |||  | |||||   || || ||  |   |  |||||  |  |  |||  |||   |         ||   | |   
CTATGAAGGATCTTTGGCTTGCCGTTTACATTGTTGACGCTGTGCTTGTCTTCTTCATCATCCCCTTCGCTATGTTTTTCTATGAAGGCGACCAGGACAAgtttgtttct-ccacgatttttttttttt--tttttttgagttattattagttggtaatgtaa--agttgttgatgttgtg-ggcttgtgttttttactgcag

upper sequence: GLYMA01G30400.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv08s0007g02270.t01 (Vitis vinifera), 5'ss of exon 1
CCATGAAGGACCTCTGGCTCGCAATTTACATCCTCGACGCCGTCCTCGTCTTCTTCGTTATCCCCTTTGCCATGTTCTACTACGAAGGCGACCAGGACAAgtaagtgtatgtcgtggtgcttttaat-ttgatgt--ttttttttttttgtttttaatttttgtaatcatatactg--aaattgaacgaaccagacgttggtccg
| |||| ||| || |||||||| ||||||||  | || || || ||||| ||||| ||||| ||||| ||||||||||||||||||||||||||||||||||  ||   | | | | | || ||||| ||| ||   |||  | ||| |  ||||  |     | ||    | |||  | | |||| |||    |  |       
CGATGAGGGATCTGTGGCTCGCCATTTACATTGTTGATGCTGTACTCGTATTCTTTGTTATTCCCTTCGCCATGTTCTACTACGAAGGCGACCAGGACAAgtcggtac-tttagggtttctattaatattgctgagatttcgtatttctccttttgttagagttgattggttgctgcgagactgaaggaaaataaaataaa----

upper sequence: GLYMA01G30400.1 (Glycine max), 5'ss of exon 1
lower sequence: EFJ32053 (Selaginella moellendorffii), 5'ss of exon 1
CCATGAAGGACCTCTGGCTCGCAATTTACATCCTCGACGCCGTCCTCGTCTTCTTCGTTATCCCCTTTGCCATGTTCTACTACGAAGGCGACCAGGACAAgtaagtgtatgtcgtggtgcttttaatttgatgtttttttttttttgtttttaatttttgtaatcatatactgaaattgaacgaaccagacgttggtccg
|||||||||||||||||   ||  | |||||| ||||||| || ||||||||||| || || || ||| | ||||||||||||||||| ||||| || ||||||||  ||  |  | | ||||  ||| |||    ||   |  |  || ||  | ||| |  |    | |  |                          
CCATGAAGGACCTCTGGTATGCCGTCTACATCATCGACGCTGTGCTCGTCTTCTTGGTAATTCCTTTTACAATGTTCTACTACGAAGGTGACCAAGAGAAgtaagt-cattactagtttctttccattcgattggcttgagtcctcattgtttgtgtttatttttcctttcatag-------------------------

upper sequence: GLYMA01G30400.1 (Glycine max), 5'ss of exon 1
lower sequence: EFJ37798 (Selaginella moellendorffii), 5'ss of exon 1
CCATGAAGGACCTCTGGCTCGCAATTTACATCCTCGACGCCGTCCTCGTCTTCTTCGTTATCCCCTTTGCCATGTTCTACTACGAAGGCGACCAGGACAAgtaagtgtatgtcgtggtgcttttaatttgat--gtttttttttttttgtttttaatttttgtaatcatatactgaaattgaacgaaccagacgttggtccg
|||||||||||||||||   ||  | |||||| ||||||| || ||||||||||| || || || ||| | ||||||||||||||||| ||||| || ||||||||   |    | ||   ||  ||| | |    || |  || ||||| |||| ||||  |  ||| |                                
CCATGAAGGACCTCTGGTATGCCGTCTACATCATCGACGCTGTGCTCGTCTTCTTGGTAATTCCTTTTACGATGTTCTACTACGAAGGTGACCAAGAGAAgtaagtcattac--tagtttcttcgattggcttgagttctcattgtttgtgtttatttttcctt-tcacag-------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|20449796|gb|BQ253920.1|BQ253920
EST:     TTCTTCGGTATCCCCTTTGCCATGTTCTACTACGAAGGCGACCAGGACAA                         GAGTGTTGGGAAGCGGATTAAGAGC
genomic: TTCTTCGTTATCCCCTTTGCCATGTTCTACTACGAAGGCGACCAGGACAAgtaagtgtat ... gaatctgcagGAGTGTTGGGAAGCGGATTAAGAGC