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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCATGAAGGACCTCTGGCTCGCAATTTACATCCTCGACGCCGTCCTCGTCTTCTTCGTTATCCCCTTTGCCATGTTCTACTACGAAGGCGACCAGGACAAgtaagtgtatgtcgtggtgcttttaatttgatgtttttttttttttgtttttaatttttgtaatcatatactgaaattgaacgaaccagacgttggtccg...

Basic information

species Glycine max
transcript GLYMA01G30400.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G30400.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os06g03760.2 (Oryza sativa), 5'ss of exon 1
CCATGAAGGACCTCTGGCTCGCAATTTACATCCTCGACGCCGTCCTCGTCTTCTTCGTTATCCCCTTTGCCATGTTCTACTACGAAGGCGACCAGGACAAgtaagt-gtatgtcgtggtgcttttaatttgatgtttttttttttttgtttttaat-ttttgtaatcatatactgaaattgaacgaa-ccagacgttggtccg--------
|||||||| |||||||||||| | |||||| ||||||||||||||||||| |||| |||||||| ||||||||||||||||| |||||||||||||||||||| |||| || | | | | | | || | | | | | ||| | || |||| | | || |||| | |
CCATGAAGACCCTCTGGCTCGCCGTCTACATCGCCGACGCCGTCCTCGTCTTCCTCGTCATCCCCTTCGCCATGTTCTACTACGAGGGCGACCAGGACAAgtaagtagtatacatatacatttccactctttcctctatcccattgcgcatctgctgctaaactctcactgaatgttgttgattggatccgtgtgttgttgcttcctgcag

upper sequence: GLYMA01G30400.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM5G871262_T02 (Zea mays), 5'ss of exon 1
CCATGAAGGACCTCTGGCTCGCAATTTACATCCTCGACGCCGTCCTCGTCTTCTTCGTTATCCCCTTTGCCATGTTCTACTACGAAGGCGACCAGGACAAgtaagtgtatg----tcgtggtgcttttaatttgatgtttttt-tttttttgtttttaatttttgtaatcatatactgaaattgaacgaaccagacgttggtccg
|||||| | |||||||||| |||||||| | |||||||||||||||||| |||| |||||||| || |||||||||||||| |||||||||||||||||| | ||| || || || | || | | | | | |||| | | ||| |
CCATGAGGACGCTCTGGCTCGTCGTTTACATCGTTGACGCCGTCCTCGTCTTCCTCGTCATCCCCTTCGCAATGTTCTACTACGAGGGCGACCAGGACAAgtaacctcacccccctcgctgtttccctaccttctcttcttccatccgtccgctgatgatttggacccgccttccctgcag------------------------

upper sequence: GLYMA01G30400.1 (Glycine max), 5'ss of exon 1
lower sequence: AT3G08930.1 (Arabidopsis thaliana), 5'ss of exon 1
CCATGAAGGACCTCTGGCTCGCAATTTACATCCTCGACGCCGTCCTCGTCTTCTTCGTTATCCCCTTTGCCATGTTCTACTACGAAGGCGACCAGGACAAgtaagt-gtatgtcgtggtgcttttaatttgatgtttttttttttttgtt--tttaatttttgtaatcatatactgaaattgaacgaaccagacgttggtccg
|||||||||| || ||||| || ||||| ||| | ||||| | ||||| ||||| || |||||||| || ||||| | ||| ||||||||||||||||||| || | || | | | || | ||||| | |||| ||| | ||| | | | || | || || | || | |
CCATGAAGGATCTTTGGCTTGCTATTTATATCGTGGACGCTATTCTCGTGTTCTTTGTCATCCCCTTCGCAATGTTTTTCTATGAAGGCGACCAGGACAAgttcgtagcttgatgaaattttagtatctctatgttgtaagttttgagttaatcgaatactgatgacaatttg-tgggctttttttctttcgttttttcacag

upper sequence: GLYMA01G30400.1 (Glycine max), 5'ss of exon 1
lower sequence: AT5G01460.1 (Arabidopsis thaliana), 5'ss of exon 1
CCATGAAGGACCTCTGGCTCGCAATTTACATCCTCGACGCCGTCCTCGTCTTCTTCGTTATCCCCTTTGCCATGTTCTACTACGAAGGCGACCAGGACAAgtaagtgtatgtcgtggtgcttttaatttgatgtttttttttttttgtttttaatttttgtaatcatatactgaaattgaacgaaccagacgttggtccg---
| |||||||| || ||||| || ||||||| | ||||| || || ||||||||| | |||||||| || ||||| | ||| ||||||||||||||||||| || | | | | | |||| ||| | ||||| || || || | | ||||| | | ||| ||| | || | |
CTATGAAGGATCTTTGGCTTGCCGTTTACATTGTTGACGCTGTGCTTGTCTTCTTCATCATCCCCTTCGCTATGTTTTTCTATGAAGGCGACCAGGACAAgtttgtttct-ccacgatttttttttttt--tttttttgagttattattagttggtaatgtaa--agttgttgatgttgtg-ggcttgtgttttttactgcag

upper sequence: GLYMA01G30400.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv08s0007g02270.t01 (Vitis vinifera), 5'ss of exon 1
CCATGAAGGACCTCTGGCTCGCAATTTACATCCTCGACGCCGTCCTCGTCTTCTTCGTTATCCCCTTTGCCATGTTCTACTACGAAGGCGACCAGGACAAgtaagtgtatgtcgtggtgcttttaat-ttgatgt--ttttttttttttgtttttaatttttgtaatcatatactg--aaattgaacgaaccagacgttggtccg
| |||| ||| || |||||||| |||||||| | || || || ||||| ||||| ||||| ||||| |||||||||||||||||||||||||||||||||| || | | | | | || ||||| ||| || ||| | ||| | |||| | | || | ||| | | |||| ||| | |
CGATGAGGGATCTGTGGCTCGCCATTTACATTGTTGATGCTGTACTCGTATTCTTTGTTATTCCCTTCGCCATGTTCTACTACGAAGGCGACCAGGACAAgtcggtac-tttagggtttctattaatattgctgagatttcgtatttctccttttgttagagttgattggttgctgcgagactgaaggaaaataaaataaa----

upper sequence: GLYMA01G30400.1 (Glycine max), 5'ss of exon 1
lower sequence: EFJ32053 (Selaginella moellendorffii), 5'ss of exon 1
CCATGAAGGACCTCTGGCTCGCAATTTACATCCTCGACGCCGTCCTCGTCTTCTTCGTTATCCCCTTTGCCATGTTCTACTACGAAGGCGACCAGGACAAgtaagtgtatgtcgtggtgcttttaatttgatgtttttttttttttgtttttaatttttgtaatcatatactgaaattgaacgaaccagacgttggtccg
||||||||||||||||| || | |||||| ||||||| || ||||||||||| || || || ||| | ||||||||||||||||| ||||| || |||||||| || | | | |||| ||| ||| || | | || || | ||| | | | | |
CCATGAAGGACCTCTGGTATGCCGTCTACATCATCGACGCTGTGCTCGTCTTCTTGGTAATTCCTTTTACAATGTTCTACTACGAAGGTGACCAAGAGAAgtaagt-cattactagtttctttccattcgattggcttgagtcctcattgtttgtgtttatttttcctttcatag-------------------------

upper sequence: GLYMA01G30400.1 (Glycine max), 5'ss of exon 1
lower sequence: EFJ37798 (Selaginella moellendorffii), 5'ss of exon 1
CCATGAAGGACCTCTGGCTCGCAATTTACATCCTCGACGCCGTCCTCGTCTTCTTCGTTATCCCCTTTGCCATGTTCTACTACGAAGGCGACCAGGACAAgtaagtgtatgtcgtggtgcttttaatttgat--gtttttttttttttgtttttaatttttgtaatcatatactgaaattgaacgaaccagacgttggtccg
||||||||||||||||| || | |||||| ||||||| || ||||||||||| || || || ||| | ||||||||||||||||| ||||| || |||||||| | | || || ||| | | || | || ||||| |||| |||| | ||| |
CCATGAAGGACCTCTGGTATGCCGTCTACATCATCGACGCTGTGCTCGTCTTCTTGGTAATTCCTTTTACGATGTTCTACTACGAAGGTGACCAAGAGAAgtaagtcattac--tagtttcttcgattggcttgagttctcattgtttgtgtttatttttcctt-tcacag-------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|20449796|gb|BQ253920.1|BQ253920
EST:     TTCTTCGGTATCCCCTTTGCCATGTTCTACTACGAAGGCGACCAGGACAA                         GAGTGTTGGGAAGCGGATTAAGAGC
genomic: TTCTTCGTTATCCCCTTTGCCATGTTCTACTACGAAGGCGACCAGGACAAgtaagtgtat ... gaatctgcagGAGTGTTGGGAAGCGGATTAAGAGC