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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGACCTTGTGTTCGACTAACCCTAGTTCATTGCACTGCAACTTAGCCACTTAAACCCCATTCGTTAGCCTCTCCACATCTTCACTGCTTCTTCCATACAgtgagtagcaactttctgctcctcaatgcttcatctgagttttccgtctttttgtttttcttgatgccgtttttgcctacccacttggataaagttttgatctcccgttttatttttcttttgggtgtttttcag

Basic information

species Glycine max
transcript GLYMA01G29420.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209710685|gb|BW676559.1|BW676559
EST:     TTAAACCCAATTCGTTAGCCTCTCCACATCTTCACTGCTTCTTCCATACA                         AATCCGAAACCAGACGGAATTCACAAAAGACGTTACCATGTCGGACGATGA
genomic: TTAAACCCCATTCGTTAGCCTCTCCACATCTTCACTGCTTCTTCCATACAgtgagtagca ... tgtttttcagAATCCGAAACCAGACGGAATTCACAAAAGACGTTACCATGTCGGACGATGA
EST: gi|192326702|gb|FK017329.1|FK017329
EST:     TTAAACCCCATTCGTTAGCCTCTCCACATCTTCACTGCTTCTTCCATACA                         AATCCGAAACCAGACGGAATTCACAAAAGACGTTACCATGTCGGACGATGA
genomic: TTAAACCCCATTCGTTAGCCTCTCCACATCTTCACTGCTTCTTCCATACAgtgagtagca ... tgtttttcagAATCCGAAACCAGACGGAATTCACAAAAGACGTTACCATGTCGGACGATGA
EST: gi|298195396|gb|HO039227.1|HO039227
EST:     TTAAACCCAATTAGTTAGCCTCTCCACATCTTCACTGCTTCTTCCATACA                         AATCCGAAACCAGACGGAATTCACAAAAGACGTTACCATGTCGGACGATGA
genomic: TTAAACCCCATTCGTTAGCCTCTCCACATCTTCACTGCTTCTTCCATACAgtgagtagca ... tgtttttcagAATCCGAAACCAGACGGAATTCACAAAAGACGTTACCATGTCGGACGATGA
EST: gi|13478014|gb|BG507662.1|BG507662
EST:     TTAAACCCAATTCGTTAGCCTCTCCACATCTTCACTGCTTCTTCCATACA                         AATCCGAAACCAGACGGAATTCACAAAAGACGTTACCATGTCGGACGATGA
genomic: TTAAACCCCATTCGTTAGCCTCTCCACATCTTCACTGCTTCTTCCATACAgtgagtagca ... tgtttttcagAATCCGAAACCAGACGGAATTCACAAAAGACGTTACCATGTCGGACGATGA