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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCCTCATTGCGCGCGGAATCAGCGGAAGATCCGGCAAGTCATGCCGGCTCCGGTGGTGCAACCAGCTTGACCCCGCCGTCAAGCGCAAACCCTTCACCGgtacctaatcggtttggaattgaattttgttttgtttcggtttggtttaatttgaatgttttcgaaaattgatctttggagagtagggatgagaatgcag...

Basic information

species Glycine max
transcript GLYMA01G26650.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G26650.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os01g63160.1 (Oryza sativa), 5'ss of exon 1
AGCCTCATTGCGCGCGGAATCAGCGGAAGATCCGGCAAGTCATGCCGGCTCCGGTGGTGCAACCAGCTTGACCCCGCCGTCAAGCGCAAACCCTTCACCGgtacctaatcggtttggaattgaattttgttttgtttcggtttggt--ttaatttgaatgttttcgaaaattgatctttggagagtagggatgagaatgcag-
|  || || |||||||| ||   |||  | ||||||||||| ||||| ||||| ||||| ||||| || ||||||   ||||||||||| |||||||| |||||  |||| |  |   ||  | |  | | |   | |  |  | |   | || | ||  ||     |||  | | ||||    ||      |  |||||   
ACGCTGATAGCGCGCGGGATACCCGGGCGCTCCGGCAAGTCCTGCCGCCTCCGCTGGTGTAACCAACTCGACCCCCAAGTCAAGCGCAAGCCCTTCACTGgtac--aatctgcctttcatccagtagtatctgtatcctataggatacgtgatgttaaccttaatccaaagag-tatttgtcttgtctatgaggcaatgctag

upper sequence: GLYMA01G26650.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G169316_T01 (Zea mays), 5'ss of exon 1
AGCCTCATTGCGCGCGGAATCAGCGGAAGATCCGGCAAGTCATGCCGGCTCCGGTGGTGCAACCAGCTTGACCCCGCCGTCAAGCGCAAACCCTTCACCGgtacctaatcggtttggaattgaattttgtt-ttgtttcg-gtttggtttaatttgaatgttttcgaaaattgatctttggagagtagggatgagaatgcag
|  || || ||||| || |||   ||  | ||||||||||| ||||| || || |||||||| ||||| ||||||   ||||||||||| || ||||| ||||||    |  ||     || | ||   ||  | ||| | |       ||| |  |       | ||  |||  ||       | ||     |      | 
ACGCTGATCGCGCGTGGCATCCCGGGCCGCTCCGGCAAGTCCTGCCGCCTGCGCTGGTGCAATCAGCTCGACCCCCAAGTCAAGCGCAAGCCTTTCACTGgtacc-gcccttttcaatctttacttacattgctattttgagcccatgataaatgtatcaaaacctaagcttggcctcacatatgcagtatctatgtgata-

upper sequence: GLYMA01G26650.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv08s0007g01540.t01 (Vitis vinifera), 5'ss of exon 1
AGCCTCATTGCGCGCGGAATCAGCGGAAGATCCGGCAAGTCATGCCGGCTCCGGTGGTGCAACCAGCTTGACCCCGCCGTCAAGCGCAAACCCTTCACCGgtacctaatcggtttggaattgaatt--ttgttttgtttcggtttggtttaatttgaatgttttcgaaaattgatctttggagagtagggatgagaatgcag--
|| || || || || |||||    || |||||||||||||| |||||||| || ||||| || |||||||||||| | || |||||||| ||||| || ||||     ||  | | ||  | ||||  || ||   || | |  |  ||| |   |  | ||||      |||   || |||      || | | |  ||    
AGTCTGATCGCCCGTGGAATTGCTGGGAGATCCGGCAAGTCCTGCCGGCTGCGCTGGTGTAATCAGCTTGACCCCTCTGTTAAGCGCAAGCCCTTTACTGgtaatc--tccatgtcgatctaaattggtttttcatttccagaatttttttaaaagcttcttttttctttttggatttcggat--cgaggttcatatcgcttaa

upper sequence: GLYMA01G26650.1 (Glycine max), 5'ss of exon 1
lower sequence: PP1S72_143V6.1 (Physcomitrella patens), 5'ss of exon 2
AGCCTCATTGCGCGCGGAATCAGCGGAAGATCCGGCAAGTCATGCCGGCTCCGGTGGTGCAACCAGCTTGACCCCGCCGTCAAGCGCAAACCCTTCACCGgtacctaatcggtttggaattgaattttgttttgtttcggtttggtttaatttgaatgttttcgaaaattgatctttggagagtagggatga-gaatgcag
|| || |||||||| || |||   ||  | ||||| ||||| ||||| || || ||||||||||||||| | || | ||||||||||||||||||||| ||| |    ||  || |   | |    | || |  ||||    |     |  |      |  ||   ||    ||    ||  |||  || |  |||| |  
AGTCTGATTGCGCGTGGCATCCCTGGCCGGTCCGGGAAGTCGTGCCGTCTGCGCTGGTGCAACCAGCTTAATCCTGGCGTCAAGCGCAAACCCTTCACAGgtgcaatttcttttcgttgtcgctactggtctcctttcatcatacccgatgtcattcttcctctgcaacccctcaccagattgtattgaggtcgaattct-

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213603552|gb|DB962698.1|DB962698
EST:     CCGGTGGTGCAACCAGCTTGACCCCGCCGTCAAGCGCAAACCCTTCACCG                         ATGAGGAGGACCGGATGATAGTTGCTGCTCATGCAATCCATGGGAACAAAT
genomic: CCGGTGGTGCAACCAGCTTGACCCCGCCGTCAAGCGCAAACCCTTCACCGgtacctaatc ... ttcttttcagATGAGGAGGACCGGATGATAGTTGCTGCTCATGCAATCCATGGGAACAAAT