Sequence
atgc intronic sequence ATGC exonic sequenceATTGGGAGCTTGATAAGCTTGACCTCTAAGAGTGAGATCAGATACGAAGGCATTCTCTACAACATCAACACCGAAGAGTCCAGTATTGGCCTCAGAAATGgtattcttctgctacccacttttttttcaaggaatttcccttaattctttctgggttttgttctttttcagtttaattttgttgctttggtttcagatct...
Basic information
species | Glycine max |
transcript | GLYMA01G22680.3 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA01G22680.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os01g02090.2 (Oryza sativa), 5'ss of exon 1
ATTGGGAGCTTGATAAGCTTGACCTCTAAGAGTGAGATCAGATACGAAGGCATTCTCTACAACATCAACACCGAAGAGTCCAGTATTGGCCTCAGAAATGgtattcttctgctacccacttttttttcaaggaatttcccttaattctttctgggttttgttctttttcagtttaattttgttgctttg-gtttcagatct--
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ATCGGGAGCCTCATCAGTTTGACATCCAAGAGCGAGATCAGGTACGAGGGCATCCTCTACAACATCAACACCGAGGAGTCCAGCATCGGCTTGCGCAATGgtattaattccat-cccgccccccgcgcccgctccccctctcatttcctc--agattcgcttgattcagcgctagatttggttcccccgtgaggtgaatctca
upper sequence: GLYMA01G22680.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os06g30060.2 (Oryza sativa), 5'ss of exon 1
ATTGGGAGCTTGATAAGCTTGACCTCTAAGAGTGAGATCAGATACGAAGGCATTCTCTACAACATCAACACCGAAGAGTCCAGTATTGGCCTCAGAAATGgt-attcttctgctacccacttttttttcaaggaatttcccttaattcttt-ctgggttttgttctttttcagtttaattttgt-tgctttggtttcagatct
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ATCGGGAGCGTGATAAGCCTCACGTCGAAGAGCGAGATCCGGTACGAGGGCGTCCTCTACACCATCAACACCGAGGAGTCCAGCATCGGGCTCAGGAACGgttaggctcctccctcccgagctcttccccctcctcctcccgcctcccctggttgggccgcgtcggcgatctgtgggagagggtgtgtgtgtgtgccgcg---
upper sequence: GLYMA01G22680.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G132796_T01 (Zea mays), 5'ss of exon 1
ATTGGGAGCTTGATAAGCTTGACCTCTAAGAGTGAGATCAGATACGAAGGCATTCTCTACAACATCAACACCGAAGAGTCCAGTATTGGCCTCAGAAATGgtattcttctgctacccacttttttttcaaggaatttcccttaattct----ttctgggttttgttctttttcagttt-aattttgttgctttggtttcagatct
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CTCGGGAGCCTCATCAGCCTGACATCGAAGAGCGAGATCAGGTACGAGGGCGTCCTCTACGACATCAACACCGAGGAGTCCAGCATCGGCCTGCGCAATGgtaaatagc-----ctcccccttctccgacgcgctcgctccgaagtccgaacccgcggccgtcgttttcctcggatgcgaaccttcatgacctagattcgctgct
upper sequence: GLYMA01G22680.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G051622_T02 (Zea mays), 5'ss of exon 1
ATTGGGAGCTTGATAAGCTTGACCTCTAAGAGTGAGATCAGATACGAAGGCATTCTCTACAACATCAACACCGAAGAGTCCAGTATTGGCCTCAGAAATGgtattc---ttctgctacccacttttttttcaaggaatttcccttaat--tctttctgggttttgttctttttcagtttaattttgttg--ctttggtttcagatct
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ATCGGGAGCCTCATTAGCCTGACTTCGAAGAGCGAGATCAGGTACGAGGGCGTCCTTTACAAAATCAACACCGAGGAGTCCAGCATCGGCCTGCGCAATGgtaactgctttctcttctctagcgcactcgctccgcatccgctgctgtcattttcctcagatgcgaatgttccagacctagatttgctggtccctggtgc-------
upper sequence: GLYMA01G22680.1 (Glycine max), 5'ss of exon 1
lower sequence: AT1G26110.2 (Arabidopsis thaliana), 5'ss of exon 1
ATTGGGAGCTTGATAAGCTTGACCTCTAAGAGTGAGATCAGATACGAAGGCATTCTCTACAACATCAACACCGAAGAGTCCAGTATTGGCCTCAGAAATGgtattcttctgctacccacttttttttcaagga----atttcccttaattctt--tctgggttttgttctttttcagtttaattttgttgctttggtttcagatct
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GTTGGGAGCTTGATTAGTTTGACATCTAAGAGTGAGATCAGATACGAAGGGATCCTTTACAATATTAATACAGATGAATCCAGTATCGGACTTCAAAACGgtacgatccg--tttccacttccgtttcgggattaccagatttgttaagtgttaattttggtggtgttttctctcggatttggtagaaactaatggtttctt----
upper sequence: GLYMA01G22680.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv01s0011g02820.t01 (Vitis vinifera), 5'ss of exon 1
ATTGGGAGCTTGATAAGCTTGACCTCTAAGAGTGAGATCAGATACGAAGGCATTCTCTACAACATCAACACCGAAGAGTCCAGTATTGGCCTCAGAAATGgtattcttctgctacccacttttttttcaaggaatttcccttaattctttctgggttttgttctttttcagtttaattttgttgctttggtttcagatct--
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ATCGGGAGCTTGATTAGTTTGACATCCAAAAGCGAGATCAGGTACGAGGGCGTTCTCTACAACATCAACACCGAGGAGTCCAGCATCGGATTGCGAAACGgtat--tttcgttatttcttgcggggtttcgtaactttcgttttattttctttgatttcggtgttttttcgctgcgttttctctcaacttttcccaattggtMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|209708362|gb|BW683952.1|BW683952EST: CATTCTCTACAACATCAACACCGAAGAGTCCAGTATTGGCCTCAGAAATG TGCGATCTTTTGGAACAGAAGGAAGAAAAAAGGATGGCCCACAAATTCCTC
genomic: CATTCTCTACAACATCAACACCGAAGAGTCCAGTATTGGCCTCAGAAATGgtattcttct ... tgtgttgtagTGCGATCTTTTGGAACAGAAGGAAGAAAAAAGGATGGCCCACAAATTCCTC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATTGGGAGCTTGATAAGCTTGACCTCTAAGAGTGAGATCAGATACGAAGGCATTCTCTACAACATCAACACCGAAGAGTCCAGTATTGGCCTCAGAAATGgtattcttctgctacccacttttttttcaaggaatttcccttaattctttctgggttttgttctttttcagtttaattttgttgctttggtttcagatct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA