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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGCTGCAACACAATGGGAGTCCACGGTCTCTGGGAACTCCTCGCCCCCGTCGGTCGCCGCGTCTCCGTCGAAACCCTTGCCGGAAAAACCCTAGCCGTTGgtactccctcaaaccctaatactttctttctctctctcccatttcataaacaaataaccgactttttcatttttctcgcataatttcag

Basic information

species Glycine max
transcript GLYMA01G16370.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G16370.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv14s0066g01630.t01 (Vitis vinifera), 5'ss of exon 1
CGCTGCAACACAATGGGAGTCCACGGTCTCTGGGAACTCCTCGCCCCCGTCGGTCGCCGCGTCTCCGTCGAAACCCTTGCCGGAAAAACCCTAGCCGTTGgtactccctcaaaccctaa--tactttctttctctctctcccatttcataaacaaataaccgactttttcatttttctcgcataatttcag
      | ||  |||||||| |||||||||||||||||  | ||||| ||||||||||| || || ||||| || ||||||||||||   || ||| | ||| |  | |  |||||||   |     ||| | ||    ||||  ||||     |   ||  | |||     | || |     |       
------AGCAAGATGGGAGTGCACGGTCTCTGGGAACTTTTGGCCCCTGTCGGTCGCCGTGTGTCTGTCGAGACTCTTGCCGGAAAACGACTCGCCATAGgttcatcgt--aaccctagcttgaacccttgccctaaaacccacatcatttctgat--acgaattttaatcgtattgttctgcag------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193647233|gb|FK588400.1|FK588400
EST:     CGGTCGCCGCGTCTCCGTCGAAACCCTTGCCGGAAAAACCCTAGCCGTTG                         ATGCGAGCATATGGATGGTACAGTTTGTCAAAGCGATGCGCGACGAGAAGG
genomic: CGGTCGCCGCGTCTCCGTCGAAACCCTTGCCGGAAAAACCCTAGCCGTTGgtactccctc ... ataatttcagATGCGAGCATATGGATGGTACAGTTTGTCAAAGCGATGCGCGACGAGAAGG