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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAATTCTCTGTTCACGTTCACATCTTTTATAAGCCGTTCCATCTTTTGCTTTCTCCTGGGACTGCACCCTTCACCACAAGTCACAAGTATCTCTCTTAGgttcttcttgttctttacattaccccagttttgcttaaaaatttgattttgatgttctaggaaggtttgttaatgaaaccaagtgattcccatttgcttg...

Basic information

species Glycine max
transcript GLYMA01G05080.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22933973|gb|BU551112.1|BU551112
EST:     CAAGTCACAAGTATCTCTCTTAG                         GTTGACTTGTGAGAATGTCCACTCCAGCAAGGAAGAGACTCATGAGAGATT
genomic: CAAGTCACAAGTATCTCTCTTAGgttcttcttg ... tgaaaaatagGTTGACTTGTGAGAATGTCCACTCCAGCAAGGAAGAGACTCATGAGAGATT
EST: gi|14126011|gb|BG790449.1|BG790449
EST:     CAAGTCACAAGTATCTCTCTTAG                         GTTGACTTGTGAGAATGTCCACTCCAGCAAGGAAGAGACTCATGAGAGATT
genomic: CAAGTCACAAGTATCTCTCTTAGgttcttcttg ... tgaaaaatagGTTGACTTGTGAGAATGTCCACTCCAGCAAGGAAGAGACTCATGAGAGATT
EST: gi|19452681|gb|BM954091.1|BM954091
EST:     CCACAAGTCACAAGTATCTCTCTTAG                         GTTGACTTGTGAGAATGTCCACTCCAGCAAGGAAGAGACTCATGAGAGATT
genomic: CCACAAGTCACAAGTATCTCTCTTAGgttcttcttg ... tgaaaaatagGTTGACTTGTGAGAATGTCCACTCCAGCAAGGAAGAGACTCATGAGAGATT
EST: gi|19452497|gb|BM953907.1|BM953907
EST:     CCACAAGTCACAAGTATCTCTCTTAG                         GTTGACTTGTGAGAATGTCCACTCCAGCAAGGAAGAGACTCATGAGAGATT
genomic: CCACAAGTCACAAGTATCTCTCTTAGgttcttcttg ... tgaaaaatagGTTGACTTGTGAGAATGTCCACTCCAGCAAGGAAGAGACTCATGAGAGATT
EST: gi|151402063|gb|EV271876.1|EV271876
EST:     TTTCTCCTGGGACTGCACCCTTCACCACAAGTCACAAGTATCTCTCTTAG                         GTTGACTTGTGAGAATGTCCACTCCAGCAAGGAAGAGACTCATGAGAGATT
genomic: TTTCTCCTGGGACTGCACCCTTCACCACAAGTCACAAGTATCTCTCTTAGgttcttcttg ... tgaaaaatagGTTGACTTGTGAGAATGTCCACTCCAGCAAGGAAGAGACTCATGAGAGATT
EST: gi|11273919|gb|BF324308.1|BF324308
EST:     CACCACAAGTCACAAGTATCTCTCTTAG                         GTTGACTTGTGAGAATGTCCACTCCAGCAAGGAAGAGACTCATGAGAGATT
genomic: CACCACAAGTCACAAGTATCTCTCTTAGgttcttcttg ... tgaaaaatagGTTGACTTGTGAGAATGTCCACTCCAGCAAGGAAGAGACTCATGAGAGATT