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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTGGGTGTTGGGTTAGGTTGAGGTTTATTGGGAGCTGCATTTCTTCAAGATCCAAGGTTGATACCTCAGTCAGTGCCAGTGGCATCAGTACTCATTATGgtaaattcatcactatttccttgcaagacttattgttgttcatgtgatgatgtgcttgcttgcttggagttggatgttccatctttggtaaatgtgtttg...

Basic information

species Glycine max
transcript GLYMA01G04930.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G04930.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv01s0026g01620.t01 (Vitis vinifera), 5'ss of exon 1
---GCTGGGTGTTG---GGTTAGGTTGAGGTTTATTGGGAGCTGCATTTCTTCAAGATCCAAGGTTGATACCTCAGTCAGTGCCAGTGGCATCAGTACTCATTATGgtaaattcatcactatttccttgcaagacttattgttgttcatgtgatgatgtgcttgcttgcttggagt-tggatgttccatctttggtaaatgt--gtttg
    ||||||||||   ||||| | | |||||||| |  |||||||||||||||||||| || ||||||| |||  | |||      || | |||||||||||||||||| |||   | | | |   |  | |  || |||| | |  |    |  |    || |||  |   | | || || |||    ||   |   | |   ||||
GAGACTGGGTGTTGTTGGGTTAAGCTCAGGTTTATGGCCAGCTGCATTTCTTCAAGATCTAAAGTTGATAGCTCCATTAGT------GGAACCAGTACTCATTATGgtaagttc--tattttctttgttaatgtgtttttgtggctggtactctt-taaattttcttattattattatgtattttctggattgatttgttcttgatttg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193645938|gb|FK593895.1|FK593895
EST:     ATCCAAGGTTGATACCTCAGTCAGTGCCAGTGGCATCAGTACTCATTATG                         CTGAAAGTAAATCAACTAATGATACTAGTAGAGACCAACCAACAGCTCCAG
genomic: ATCCAAGGTTGATACCTCAGTCAGTGCCAGTGGCATCAGTACTCATTATGgtaaattcat ... ttcccattagCTGAAAGTAAATCAACTAATGATACTAGTAGAGACCAACCAACAGCTCCAG
EST: gi|15285775|gb|BI469666.1|BI469666
EST:     TCAGTGCCAGTGGCATCAGTACTCATTATG                         CTGAAAGTAAATCAACTAATGATACTAGTAGAGACCAACCAACAGCTCCAG
genomic: TCAGTGCCAGTGGCATCAGTACTCATTATGgtaaattcat ... ttcccattagCTGAAAGTAAATCAACTAATGATACTAGTAGAGACCAACCAACAGCTCCAG