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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCGCCCTCTCGAGGACGACTGCCAGCTCCAGATCTTCAAGTTCGACGACGACGAAGGCCGCGACACCTTCTGGCACTCCAGCGCTCACATTCTCGGCCAGgttcagttcatttgtttttttatattaatttttgtttcaattcggattttgatgaattaatcattattattgttgttgttgttgctgctgctgctgttgttattgacttattgctattttttgttttggttatttgcag

Basic information

species Glycine max
transcript GLYMA01G03930.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G03930.1 (Glycine max), 5'ss of exon 1
lower sequence: PP1S400_36V6.1 (Physcomitrella patens), 5'ss of exon 3
GCGCCCTCTCGAGGACGACTGCCAGCTCCAGATCTTCAAGTTCGACGACGACGAAGGCCGCGACACCTTCTGGCACTCCAGCGCTCACATTCTCGGCCAGgttcagttcatttgtttttttatattaatttttgtttcaattcggattttgatgaattaat-cattattattgttgttgttgttgctgctgctgctgttgttattgacttattgctattttttgttttggttatttgcag
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GAGACCATTGGAGGGCGACTGCACTCTACAGTTACACAAATTTGAGTCAGACAAGGGTCGCGACACCTTCTGGCACTCGAGTGCTCACATTCTTGGCCAGgttt--tttgttcgtcctttt---tacattcatgcagtgatttgg--tttggtcattagttgcgttgcaatatgagacttggcgacagcacttgacagttctttggatgtgt----atttcccattgcag----------