Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
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 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCGCTAACCTAGCTTTGGATCGTCTTCTCGAGGTTCCTCCGAATCAGCTCTACGCAGCTGCTGCAATCGTGATTTTCACAACGCTGCTTCTTCTCTCAAgtgagttcgctgttcgcttcattgtcgaattctaactcttcttttcttttaatcgattatcagtgtttattgtcggtttctgtttgcag

Basic information

species Glycine max
transcript GLYMA01G03540.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298196763|gb|HO041506.1|HO041506
EST:     CTACGCAGCTGCTGCAATCGTGATTTTCACAACGCTGCTTCTTCTCTCAA                         TTCGGTTGTTCAAGCGTGCGAAGTCAAACACTGTTGTGTTGGCCGGGCTCA
genomic: CTACGCAGCTGCTGCAATCGTGATTTTCACAACGCTGCTTCTTCTCTCAAgtgagttcgc ... ctgtttgcagTTCGGTTGTTCAAGCGTGCGAAGTCAAACACTGTTGTGTTGGCCGGGCTCA
EST: gi|17021044|gb|BM092078.1|BM092078
EST:     CTACGCAGCTGCTGCAATCGTGATTTTCACAACGCTGCTTCTTCTCTCAA                         TTCGGTTGTTCAAGCGTGCGAAGTCAAACACTGTTGTGTTGGCCGGGCTCA
genomic: CTACGCAGCTGCTGCAATCGTGATTTTCACAACGCTGCTTCTTCTCTCAAgtgagttcgc ... ctgtttgcagTTCGGTTGTTCAAGCGTGCGAAGTCAAACACTGTTGTGTTGGCCGGGCTCA
EST: gi|298171167|gb|HO016199.1|HO016199
EST:     CTACGCAGCTGCTGCAATCGTGATTTTCACAACGCTGCTTCTTCTCTCAA                         TTCGGTTGTTCAAGCGTGCGAAGTCAAACACTGTTGTGTTGGCCGGGCTCA
genomic: CTACGCAGCTGCTGCAATCGTGATTTTCACAACGCTGCTTCTTCTCTCAAgtgagttcgc ... ctgtttgcagTTCGGTTGTTCAAGCGTGCGAAGTCAAACACTGTTGTGTTGGCCGGGCTCA
EST: gi|7925655|gb|AW831681.1|AW831681
EST:     CTACGCAGCTGCTGCAATCGTGATTTTCACAACGCTGCTTCTTCTCTCAA                         TTCGGTTGTTCAAGCGTGCGAAGTCAAACACTGTTGTGTTGGCCGGGCTCA
genomic: CTACGCAGCTGCTGCAATCGTGATTTTCACAACGCTGCTTCTTCTCTCAAgtgagttcgc ... ctgtttgcagTTCGGTTGTTCAAGCGTGCGAAGTCAAACACTGTTGTGTTGGCCGGGCTCA
EST: gi|7924926|gb|AW830952.1|AW830952
EST:     CTACGCAGCTGCTGCAATCGTGATTTTCACAACGCTGCTTCTTCTCTCAA                         TTCGGTTGTTCAAGCGTGCGAAGTCAAACACTGTTGTGTTGGCCGGGCTCA
genomic: CTACGCAGCTGCTGCAATCGTGATTTTCACAACGCTGCTTCTTCTCTCAAgtgagttcgc ... ctgtttgcagTTCGGTTGTTCAAGCGTGCGAAGTCAAACACTGTTGTGTTGGCCGGGCTCA
EST: gi|20497759|gb|BQ272689.1|BQ272689
EST:     CTACGCAGCTGCTGCAATCGTGATTTTCACAACGCTGCTTCTTCTCTCAA                         TTCGGTTGTTCAAGCGTGCGAAGTCAAACACTGTTGTGTTGGCCGGGCTCA
genomic: CTACGCAGCTGCTGCAATCGTGATTTTCACAACGCTGCTTCTTCTCTCAAgtgagttcgc ... ctgtttgcagTTCGGTTGTTCAAGCGTGCGAAGTCAAACACTGTTGTGTTGGCCGGGCTCA
EST: gi|9258120|gb|BE346267.1|BE346267
EST:     CTACGCAGCTGCTGCAATCGTGATTTTCACAACGCTGCTTCTTCTCTCAA                         TTCGGTTGTTCAAGCGTGCGAAGTCAAACACTGTTGTGTTGGCCGGGCTCA
genomic: CTACGCAGCTGCTGCAATCGTGATTTTCACAACGCTGCTTCTTCTCTCAAgtgagttcgc ... ctgtttgcagTTCGGTTGTTCAAGCGTGCGAAGTCAAACACTGTTGTGTTGGCCGGGCTCA
EST: gi|20497767|gb|BQ272697.1|BQ272697
EST:     CTACGCAGCTGCTGCAATCGTGATTTTCACAACGCTGCTTCTTCTCTCAA                         TTCGGTTGTTCAAGCGTGCGAAGTCAAACACTGTTGTGTTGGCCGGGCTCA
genomic: CTACGCAGCTGCTGCAATCGTGATTTTCACAACGCTGCTTCTTCTCTCAAgtgagttcgc ... ctgtttgcagTTCGGTTGTTCAAGCGTGCGAAGTCAAACACTGTTGTGTTGGCCGGGCTCA
EST: gi|192319496|gb|FK005936.1|FK005936
EST:     CTACGCAGCTGCTGCAATCGTGATTTTCACAACGCTGCTTCTTCTCTCAA                         TTCGGTTGTTCAAGCGTGCGAAGTCAAACACTGTTGTGTTGGCCGGGCTCA
genomic: CTACGCAGCTGCTGCAATCGTGATTTTCACAACGCTGCTTCTTCTCTCAAgtgagttcgc ... ctgtttgcagTTCGGTTGTTCAAGCGTGCGAAGTCAAACACTGTTGTGTTGGCCGGGCTCA
EST: gi|298166915|gb|HO010354.1|HO010354
EST:     CTACGCAGCTGCTGCAATCGTGATTTTCACAACGCTGCTTCTTCTCTCAA                         TTCGGTTGTTCAAGCGTGCGAAGTCAAACACTGTTGTGTTGGCCGGGCTCA
genomic: CTACGCAGCTGCTGCAATCGTGATTTTCACAACGCTGCTTCTTCTCTCAAgtgagttcgc ... ctgtttgcagTTCGGTTGTTCAAGCGTGCGAAGTCAAACACTGTTGTGTTGGCCGGGCTCA
EST: gi|298189852|gb|HO038255.1|HO038255
EST:     CTACGCAGCTGCTGCAATCGTGATTTTCACAACGCTGCTTCTTCTCTCAA                         TTCGGTTGTTCAAGCGTGCGAAGTCAAACACTGTTGTGTTGGCCGGGCTCA
genomic: CTACGCAGCTGCTGCAATCGTGATTTTCACAACGCTGCTTCTTCTCTCAAgtgagttcgc ... ctgtttgcagTTCGGTTGTTCAAGCGTGCGAAGTCAAACACTGTTGTGTTGGCCGGGCTCA
EST: gi|213597292|gb|DB962082.1|DB962082
EST:     CTACGCAGCTGCTGCAATCGTGATTTTCACAACGCTGCTTCTTCTCTCAA                         TTCGGTTGTTCAAGCGTGCGAAGTCAAACACTGTTGTGTTGGCCGGGCTCA
genomic: CTACGCAGCTGCTGCAATCGTGATTTTCACAACGCTGCTTCTTCTCTCAAgtgagttcgc ... ctgtttgcagTTCGGTTGTTCAAGCGTGCGAAGTCAAACACTGTTGTGTTGGCCGGGCTCA
EST: gi|23733200|gb|BU764786.1|BU764786
EST:     CTACGCAGCTGCTGCAATCGTGATTTTCACAACGCTGCTTCTTCTCTCAA                         TTCGGTTGTTCAAGCGTGCGAAGTCAAACACTGTTGTGTTGGCCGGGCTCA
genomic: CTACGCAGCTGCTGCAATCGTGATTTTCACAACGCTGCTTCTTCTCTCAAgtgagttcgc ... ctgtttgcagTTCGGTTGTTCAAGCGTGCGAAGTCAAACACTGTTGTGTTGGCCGGGCTCA
EST: gi|9258144|gb|BE346291.1|BE346291
EST:     CTACGCAGCTGCTGCAATCGTGATTTTCACAACGCTGCTTCTTCTCTCAA                         TTCGGTTGTTCAAGCGTGCGAAGTCAAACACTGTTGTGTTGGCCGGGCTCA
genomic: CTACGCAGCTGCTGCAATCGTGATTTTCACAACGCTGCTTCTTCTCTCAAgtgagttcgc ... ctgtttgcagTTCGGTTGTTCAAGCGTGCGAAGTCAAACACTGTTGTGTTGGCCGGGCTCA
EST: gi|298182273|gb|HO026448.1|HO026448
EST:     CTACGCAGCTGCTGCAATCGTGATTTTCACAACGCTGCTTCTTCTCTCAA                         TTCGGTTGTTCAAGCGTGCGAAGTCAAACACTGTTGTGTTGGCCGGGCTCA
genomic: CTACGCAGCTGCTGCAATCGTGATTTTCACAACGCTGCTTCTTCTCTCAAgtgagttcgc ... ctgtttgcagTTCGGTTGTTCAAGCGTGCGAAGTCAAACACTGTTGTGTTGGCCGGGCTCA
EST: gi|192319497|gb|FK005937.1|FK005937
EST:     CTACGCAGCTGCTGCAATCGTGATTTTCACAACGCTGCTTCTTCTCTCAA                         TTCGGTTGTTCAAGCGTGCGAAGTCAAACACTGTTGTGTTGGCCGGGCTCA
genomic: CTACGCAGCTGCTGCAATCGTGATTTTCACAACGCTGCTTCTTCTCTCAAgtgagttcgc ... ctgtttgcagTTCGGTTGTTCAAGCGTGCGAAGTCAAACACTGTTGTGTTGGCCGGGCTCA
EST: gi|12691346|gb|BG157682.1|BG157682
EST:     CTACGCAGCTGCTGCAATCGTGATTTTCACAACGCTGCTTCTTCTCTTAA                         TTCGGTTGGTCAAGCGTGCGAAGTCAAACACTGTTGTGTTGGCCGGGCTCA
genomic: CTACGCAGCTGCTGCAATCGTGATTTTCACAACGCTGCTTCTTCTCTCAAgtgagttcgc ... ctgtttgcagTTCGGTTGTTCAAGCGTGCGAAGTCAAACACTGTTGTGTTGGCCGGGCTCA
EST: gi|298165762|gb|HO008733.1|HO008733
EST:     CTACGCAGCTGCTGCAATCGTGATTTTCACAACGCTGCTTCTTCTCTCAA                         TTCGGTTGTTCAAGCGTGCGAAGTCAAACACTGTTGTGTTGGCCGGGCTCA
genomic: CTACGCAGCTGCTGCAATCGTGATTTTCACAACGCTGCTTCTTCTCTCAAgtgagttcgc ... ctgtttgcagTTCGGTTGTTCAAGCGTGCGAAGTCAAACACTGTTGTGTTGGCCGGGCTCA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTCGCTAACCTAGCTTTGGATCGTCTTCTCGAGGTTCCTCCGAATCAGCTCTACGCAGCTGCTGCAATCGTGATTTTCACAACGCTGCTTCTTCTCTCAAgtgagttcgctgttcgcttcattgtcgaattctaactcttcttttcttttaatcgattatcagtgtttattgtcggtttctgtttgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - -  CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGCT