Skip to another splice site:
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCGTATCGCCAGGTTCCTCAAGGCCGGAAAGTACGCCGAGCGCGTCGGCGCCGGAGCCCCCGTCTACCTCGCCGCCGTTCTCGAATATCTCGCTGCTGAGgtaattgcagcaatttcctgtcgattttcactttgtttttttaaattatccttccctgtaattagatctagggttttgagattcaagtatctgtttttgagtaattgaatgatcggaacattgttttag

Basic information

species Glycine max
transcript GLYMA01G02720.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G02720.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os07g36130.1 (Oryza sativa), 5'ss of exon 1
TCGTATCGCCAGGTTCCTCAAGGCCGGAAAGTACGCCGAGCGCGTCGGCGCCGGAGCCCCCGTCTACCTCGCCGCCGTTCTCGAATATCTCGCTGCTGAGgtaattgcagcaatttcctgtcgattttcactttgtttttttaaattatccttccctgtaattagatctagggttttgagattcaagtatctgtttttgagtaattgaatgatcggaacattgttttag
  | ||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| || ||||| |||||||||   |  |   |    ||  ||||||   | ||||  |   |  ||  |      |   |||  ||  | ||| | |||||    | | |   ||||  |  | || |                   
CAGGATCGCGAGGTTCCTCAAGGCCGGGAAGTACGCCGAGCGCGTCGGCGCCGGGGCCCCCGTCTACCTCGCCGCCGTCCTCGAGTACCTCGCCGCTGAGgtatgcgtcggtgtgatttggggattttt-ttctgttcgtccgatctaggc------gatgttatttcgggtgttgttagatt----tgtttcagtttggttcgtcgatta------------------

upper sequence: GLYMA01G02720.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os12g25120.1 (Oryza sativa), 5'ss of exon 1
TCGTATCGCCAGGTTCCTCAAGGCCGGAAAGTACGCCGAGCGCGTCGGCGCCGGAGCCCCCGTCTACCTCGCCGCCGTTCTCGAATATCTCGCTGCTGAGgtaattgcagcaatttcctgtcgattttcactttgtttttttaaattatccttccctgtaattagatctagggttttgagattcaagtatctgtttttgagtaattgaatgatcggaacattgttttag
  | ||||||||||||||||||||||| |||||||||||||||||||||||||| || |||||||||||||||||||| ||||| || ||||| || |||||| | ||       ||||||  |    | | || |    ||  ||     ||    |  ||| ||| | ||| | |  |   | |     ||| |  | ||  ||| ||                   
GAGGATCGCCAGGTTCCTCAAGGCCGGCAAGTACGCCGAGCGCGTCGGCGCCGGCGCTCCCGTCTACCTCGCCGCCGTCCTCGAGTACCTCGCCGCCGAGgtattcgc-------tcctgt--acccacccgttctcggattggatctgatttgatggcgatt-gatttggggatctaggtcgcca----ttgtctccgtgttcttggatccgt---------------

upper sequence: GLYMA01G02720.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os08g33100.1 (Oryza sativa), 5'ss of exon 1
TCGTATCGCCAGGTTCCTCAAGGCCGGAAAGTACGCCGAGCGCGTCGGCGCCGGAGCCCCCGTCTACCTCGCCGCCGTTCTCGAATATCTCGCTGCTGAGgtaattgcagcaatttcctgtcgattttcactttgtttttttaaattatccttccctgtaattagatctagggttttgagattcaagtatctgtttttgagtaattgaatgatcggaacattgttttag
  | |||||| | |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| || ||||| || ||||||      || |      | ||   |  | || ||  |     |||             ||| |||  | |  || | | |   | | || ||||  |  |  ||||||  ||| |            
CAGGATCGCCCGCTTCCTCAAGGCCGGCAAGTACGCCGAGCGCGTCGGCGCCGGCGCCCCCGTCTACCTCGCCGCCGTCCTCGAGTACCTCGCCGCCGAGgtac-----gccacgcatggacgcactcgaattcgtggtc--ggattg-----------gattggatggatgaattcgggct--gaatttc-gtttggggatttttgaattctcgcag-----------

upper sequence: GLYMA01G02720.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os07g36140.1 (Oryza sativa), 5'ss of exon 1
TCGTATCGCCAGGTTCCTCAAGGCCGGAAAGTACGCCGAGCGCGTCGGCGCCGGAGCCCCCGTCTACCTCGCCGCCGTTCTCGAATATCTCGCTGCTGAGgtaattgcagcaatttcctgtcgattttcactttgtttttttaaattatccttccctgtaattagatctagggttttgagattcaagtatctgtttttgagtaattgaatgatcggaacattgttttag
  | |||||| ||||| | |||||||| |||||||||||| | ||||||||||| ||||| ||||||||||||||||| ||||| || ||||| |||||||||  | |     | | |   | ||||   |||  ||||      || |    |  || |||| |  |  ||| || | | ||  || ||  |   | || |  | |                      
CAGGATCGCCCGGTTCTTGAAGGCCGGCAAGTACGCCGAGAGGGTCGGCGCCGGCGCCCCGGTCTACCTCGCCGCCGTCCTCGAGTACCTCGCCGCTGAGgtatgttcgattctgttcctcctattt---cttgatttt----ggtttttgcgcggtgaaatttgggcggggggttcgcggttacagaattgggggtagaattttag----------------------

upper sequence: GLYMA01G02720.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G042047_T01 (Zea mays), 5'ss of exon 1
TCGTATCGCCAGGTTCCTCAAGGCCGGAAAGTACGCCGAGCGCGTCGGCGCCGGAGCCCCCGTCTACCTCGCCGCCGTTCTCGAATATCTCGCTGCTGAGgtaattgcagcaatttcctgtcgattttcactttgtttttttaaattatccttccctgtaattaga-tctagggttttgagattcaagtatctgtttttgagtaattgaatgatcggaacattgttttag
  | ||||||||||||||||||||||| |||||||||||| | ||||||||||| ||||||||||||||||| ||||| ||||| ||||| |||||||||||||    || |   | |   | |||||    | ||  | ||  ||| |  ||    | | |  || | | ||||  || | ||       ||||  | ||  |||||  ||                  
AAGGATCGCCAGGTTCCTCAAGGCCGGCAAGTACGCCGAGAGGGTCGGCGCCGGCGCCCCCGTCTACCTCGCTGCCGTGCTCGAGTATCTTGCTGCTGAGgtaa----agaagacttc---caattttgcggtggtagtgttcgatt-tggttttgagcactaggaattttgggtcctgtggttt-----cctgtcgtgga--aattgcctggat---------------

upper sequence: GLYMA01G02720.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G151726_T02 (Zea mays), 5'ss of exon 1
TCGTATCGCCAGGTTCCTCAAGGCCGGAAAGTACGCCGAGCGCGTCGGCGCCGGAGCCCCCGTCTACCTCGCCGCCGTTCTCGAATATCTCGCTGCTGAGgtaattgcagcaatttcctgt-cgattttcactttgtttttttaaattatccttccctgtaattagatctagggttttgagattcaagtatctgtttttgagtaa--------ttgaatgatcggaacattgttttag-----
  | ||||||||||||||||||||||| ||||| |||||| | ||||||||||| ||||| ||||||||||| ||||| ||||| ||||| |||||||||||||     ||       | |  |  | |    |  || |||||  || |  ||    | | | | |  | || |  || | ||    | | | |||||   |||        || | || |   |  | ||  ||       
AAGGATCGCCAGGTTCCTCAAGGCCGGCAAGTATGCCGAGAGAGTCGGCGCCGGCGCCCCTGTCTACCTCGCTGCCGTGCTCGAGTATCTTGCTGCTGAGgtaaagaaggcttccgattttgtggctattggctaattctttta--tttttgttttgagcattgaaaatttggctgctggggtttcctt-tttctttttatataaaatgggtgttaattgctgaaattactgaattgaagtag

upper sequence: GLYMA01G02720.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G151726_T01 (Zea mays), 5'ss of exon 1
TCGTATCGCCAGGTTCCTCAAGGCCGGAAAGTACGCCGAGCGCGTCGGCGCCGGAGCCCCCGTCTACCTCGCCGCCGTTCTCGAATATCTCGCTGCTGAGgtaattgcagcaatttcctgt-cgattttcactttgtttttttaaattatccttccctgtaattagatctagggttttgagattcaagtatctgtttttgagtaattgaatgatcggaacattgttttag
  | ||||||||||||||||||||||| ||||| |||||| | ||||||||||| ||||| ||||||||||| ||||| ||||| ||||| |||||||||||||     ||       | |  |  | |    |  || |||||  || |  ||    | | | | |  | || |  || | ||    | | | |||||   |                           
AAGGATCGCCAGGTTCCTCAAGGCCGGCAAGTATGCCGAGAGAGTCGGCGCCGGCGCCCCTGTCTACCTCGCTGCCGTGCTCGAGTATCTTGCTGCTGAGgtaaagaaggcttccgattttgtggctattggctaattctttta--tttttgttttgagcattgaaaatttggctgctggggtttcctt-tttctttttatat---------------------------

upper sequence: GLYMA01G02720.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G041381_T01 (Zea mays), 5'ss of exon 1
TCGTATCGCCAGGTTCCTCAAGGCCGGAAAGTACGCCGAGCGCGTCGGCGCCGGAGCCCCCGTCTACCTCGCCGCCGTTCTCGAATATCTCGCTGCTGAGgtaattgcagcaatttcctgtcgattttcactttgtttttttaaattatccttccctgtaattagatctagggttttgagattcaagtatctgtttttgagtaattgaatgatcggaacattgttttag
  | || || |||||||||||||| || |||||||| ||||||||||||||||| |||||||| |||||||||||||| ||||| || ||||| ||||||||   |||  |  ||   | ||  ||| | || |  || ||   |||  | |    |     | |  ||  ||| | | |||     | | |     ||    ||                        
CAGGATTGCTAGGTTCCTCAAGGCGGGCAAGTACGCTGAGCGCGTCGGCGCCGGCGCCCCCGTGTACCTCGCCGCCGTCCTCGAGTACCTCGCGGCTGAGgtttgtgccccgcttcgttttc--tttcccctctccttgttgcgattcgcttcgggtccgcgtcg--ctgcggtctcg-gatctggttgttttgccgtggaggat------------------------

upper sequence: GLYMA01G02720.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G151826_T01 (Zea mays), 5'ss of exon 1
TCGTATCGCCAGGTTCCTCAAGGCCGGAAAGTACGCCGAGCGCGTCGGCGCCGGAGCCCCCGTCTACCTCGCCGCCGTTCTCGAATATCTCGCTGCTGAGgtaattgcagcaatttcctgtcgattttcactttg---tttttttaaattatccttccctgtaattagatctagggttttgagattcaagtatctgtttttgagtaattgaatgatcggaacattgttttag
  | |||||  |||||||||||||||| ||||||||||||||||| |||||||| ||||| ||||||||||| || || ||||| || ||||| ||||||||   |||  |  || | | |||   || ||| ||   ||   ||    |  |  || |||   |   |||| |    |||    ||     ||||   |     |                          
CAGGATCGCTCGGTTCCTCAAGGCCGGCAAGTACGCCGAGCGCGTGGGCGCCGGCGCCCCTGTCTACCTCGCAGCTGTCCTCGAGTACCTCGCCGCTGAGgttcgtgccccgtttccatttcg-ccttaactgtggggttcgcttcgggtccctgtcgctgccgtcctatctgg----ttgttgctc---cgtctgcggtgcgacagc------------------------

upper sequence: GLYMA01G02720.1 (Glycine max), 5'ss of exon 1
lower sequence: AT4G27230.1 (Arabidopsis thaliana), 5'ss of exon 1
TCGTATCGCCAGGTTCCTCAAGGCCGGAAAGTACGCCGAGCGCGTCGGCGCCGGAGCCCCCGTCTACCTCGCCGCCGTTCTCGAATATCTCGCTGCTGAGgtaatt-gcagcaatttcctgtcgatt-ttcactttgtttttttaaattatcct--tccctgtaattag-atctagggttttgagattcaagtatctgtttttgagtaattgaatgatcggaacattgttttag
|||||||||  | ||  | || ||||| |||||||||||||| || || |||||||| || ||||| |||||||||||||| ||||| ||||| |||||||||||  |   |   |   | ||   | || | |||  | |||| |   |      |   | ||  | | |||||||||| ||   || |  | |   |                                   
TCGTATCGCTCGATTTTTGAAAGCCGGTAAGTACGCCGAGCGTGTTGGTGCCGGAGCTCCGGTCTATCTCGCCGCCGTTCTTGAATACCTCGCCGCTGAGgtaatcagtctcttctatttatcacctgtttaatttactctttttaccgaattaaatggttatagcttgcatctagggttctggattttagattttctta----------------------------------

upper sequence: GLYMA01G02720.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv19s0014g05020.t01 (Vitis vinifera), 5'ss of exon 1
TCGTATCGCCAGGTTCCTCAAGGCCGGAAAGTACGCCGAGCGCGTCGGCGCCGGAGCCCCCGTCTACCTCGCCGCCGTTCTCGAATATCTCGCTGCTGAGgtaattgcagcaatttcctgtcgattttcactttgtttttttaaattatccttccctgtaattagatctagggttttgagattcaagtatctgtttttgagtaattgaatgatcggaacattgttttag
|||||||||  | || ||||| ||||| |||||||||||||| || |||||||| || ||||||||| | ||||| || |||||||| || || || |||||||    | ||  |||   |  |  |||||           |   ||   ||   | |  || | | |||||||   ||  | | |  |  | || ||| | |||   |||  |      ||||||||
TCGTATCGCTCGTTTTCTCAAAGCCGGTAAGTACGCCGAGCGTGTAGGCGCCGGGGCTCCCGTCTACTTGGCCGCTGTCCTCGAATACCTAGCCGCCGAGgtaa----accatcttctccttaaagttcaccgaagccccacat-ctagggttgggtttggttcggt-tagggtt---agggttagggttagggttatgactgatttg-tgactgatttgatgttttag

upper sequence: GLYMA01G02720.1 (Glycine max), 5'ss of exon 1
lower sequence: EFJ34776 (Selaginella moellendorffii), 5'ss of exon 1
TCGTATCGCCAGGTTCCTCAAGGCCGGAAAGTACGCCGAGCGCGTCGGCGCCGGAGCCCCCGTCTACCTCGCCGCCGTTCTCGAATATCTCGCTGCTGAGgtaattgcagcaatttcctgtcgattttcactttgtttttttaaattatccttccctgtaattaga-tctagggttttgagattcaa----gtatc-tgtttttgagt-aattgaa-tgatcggaacattgttttag---------
| | |||||||| || |||||||| || ||||| ||||||||||| ||||| ||||| || ||||| |||||||| |||||||||||  | || || ||||| | ||    ||| ||  || | | ||| || |   | |||     || |||  |  |   | || || |  |   ||| ||||      || || |  |||||| | ||| |   ||||  |  || |   |            
TAGGATCGCCAGATTTCTCAAGGCGGGCAAGTATGCCGAGCGCGTTGGCGCTGGAGCGCCAGTCTATCTCGCCGCGGTTCTCGAATACTTGGCGGCAGAGgtgagtg---aaatctctcgt-gttcttccctctccctattt----cattcttttccatgtctggaatcaatcgcgctgaaattcttccctgtttcattcttttgaatcaatcgcgctgatttggtcactccatctccatctccag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298195527|gb|HO043918.1|HO043918
EST:     CCGGAGCCCCCGTCTACCTCGCCGCCGTTCTCGAATATCTCGCTGCTGAG                         GTTTTGGAATTGGCTGGAAACGCTGCGAGAGATAACAAGAAGACTCGAATT
genomic: CCGGAGCCCCCGTCTACCTCGCCGCCGTTCTCGAATATCTCGCTGCTGAGgtaattgcag ... attgttttagGTTTTGGAATTGGCTGGAAACGCTGCGAGAGATAACAAGAAGACTCGAATT
EST: gi|19268973|gb|BM885229.1|BM885229
EST:     CCGGAGCCCCCGTCTACCTCGCCGCCGTTCTCGAATATCTCGCTGCTGAG                         GTTTTGGAATTGGCTGGAAACGCTGCGAGAGATAACAAGAAGACTCGAATT
genomic: CCGGAGCCCCCGTCTACCTCGCCGCCGTTCTCGAATATCTCGCTGCTGAGgtaattgcag ... attgttttagGTTTTGGAATTGGCTGGAAACGCTGCGAGAGATAACAAGAAGACTCGAATT
EST: gi|6747688|gb|AW318079.1|AW318079
EST:     CCGGAGCCCCCGTCTACCTCGCCGCCGTTCTCGAATATCTCGCTGCTGAG                         GTTTTGGAATTGGCTGGAAACGCTGCGAGAGATAACAAGAAGACTCGAATT
genomic: CCGGAGCCCCCGTCTACCTCGCCGCCGTTCTCGAATATCTCGCTGCTGAGgtaattgcag ... attgttttagGTTTTGGAATTGGCTGGAAACGCTGCGAGAGATAACAAGAAGACTCGAATT
EST: gi|17021660|gb|BM092694.1|BM092694
EST:     CCGGAGCCCCCGTCTACCTCGCCGCCGTTCTCGAATATCTCGCTGCTGAG                         GTTTTGGAATTGGCTGGAAACGCTGCGAGAGATAACAAGAAGACTCGAATT
genomic: CCGGAGCCCCCGTCTACCTCGCCGCCGTTCTCGAATATCTCGCTGCTGAGgtaattgcag ... attgttttagGTTTTGGAATTGGCTGGAAACGCTGCGAGAGATAACAAGAAGACTCGAATT
EST: gi|7042064|gb|AW471958.1|AW471958
EST:     CCGGAGCCCCCGTCTACCTCGCCGCCGTTCTCAAATATCTCGCTGCTGAG                         GTTTTGGAATTGGCTGGAAACGCTGCGAGAGATAACAAGAAGACTCGAATT
genomic: CCGGAGCCCCCGTCTACCTCGCCGCCGTTCTCGAATATCTCGCTGCTGAGgtaattgcag ... attgttttagGTTTTGGAATTGGCTGGAAACGCTGCGAGAGATAACAAGAAGACTCGAATT
EST: gi|193630313|gb|FK581374.1|FK581374
EST:     CCGGAGCCCCCGTCTACCTCGCCGCCGTTCTCGAATATCTCGCTGCTGAG                         GTTTTGGAATTGGCTGGAAACGCTGCGAGAGATAACAAGAAGACTCGAATT
genomic: CCGGAGCCCCCGTCTACCTCGCCGCCGTTCTCGAATATCTCGCTGCTGAGgtaattgcag ... attgttttagGTTTTGGAATTGGCTGGAAACGCTGCGAGAGATAACAAGAAGACTCGAATT
EST: gi|193570719|gb|FK529458.1|FK529458
EST:     CCGGAGCCCCCGTCTACCTCGCCGCCGTTCTCGAATATCTCGCTGCTGAG                         GTTTTGGAATTGGCTGGAAACGCTGCGAGAGATAATAAGAAGACTCGAATT
genomic: CCGGAGCCCCCGTCTACCTCGCCGCCGTTCTCGAATATCTCGCTGCTGAGgtaattgcag ... attgttttagGTTTTGGAATTGGCTGGAAACGCTGCGAGAGATAACAAGAAGACTCGAATT
EST: gi|298195589|gb|HO043980.1|HO043980
EST:     CCGGAGCCCCCGTCTACCTCGCCGCCGTTCTCGAATATCTCGCTGCTGAG                         GTTTTGGAATTGGCTGGAAACGCTGCGAGAGATAACAAGAAGACTCGAATT
genomic: CCGGAGCCCCCGTCTACCTCGCCGCCGTTCTCGAATATCTCGCTGCTGAGgtaattgcag ... attgttttagGTTTTGGAATTGGCTGGAAACGCTGCGAGAGATAACAAGAAGACTCGAATT
EST: gi|298197504|gb|HO044983.1|HO044983
EST:     CCGGAGCCCCCGTCTACCTCGCCGCCGTTCTCGAATATCTCGCTGCTGAG                         GTTTTGGAATTGGCTGGAAACGCTGCGAGAGATAACAAGAAGACTCGAATT
genomic: CCGGAGCCCCCGTCTACCTCGCCGCCGTTCTCGAATATCTCGCTGCTGAGgtaattgcag ... attgttttagGTTTTGGAATTGGCTGGAAACGCTGCGAGAGATAACAAGAAGACTCGAATT
EST: gi|58016368|gb|CX703110.1|CX703110
EST:     CCGGAGCCCCCGTCTACCTCGCCGCCGTTCTCGAATATCTCGCTGCTGAG                         GTTTTGGAATTGGCTGGAAACGCTGCGAGAGATAACAAGAAGACTCGAATT
genomic: CCGGAGCCCCCGTCTACCTCGCCGCCGTTCTCGAATATCTCGCTGCTGAGgtaattgcag ... attgttttagGTTTTGGAATTGGCTGGAAACGCTGCGAGAGATAACAAGAAGACTCGAATT
EST: gi|254329181|gb|GR833553.1|GR833553
EST:     CCGGAGCCCCCGTCTACCTCGCCGCCGTTCTCGAATATCTCGCTGCTGAG                         GTTTTGGAATTGGCTGGAAACGCTGCGAGAGATAACAAGAAGACTCGAATT
genomic: CCGGAGCCCCCGTCTACCTCGCCGCCGTTCTCGAATATCTCGCTGCTGAGgtaattgcag ... attgttttagGTTTTGGAATTGGCTGGAAACGCTGCGAGAGATAACAAGAAGACTCGAATT
EST: gi|9985837|gb|BE660064.1|BE660064
EST:     CCGGAGCCCCCGTCTACCTCGCCGCCGTTCTCGAATATCTCGCTGCTGAG                         GTTTTGGAATTGGCTGGAAACGCTGCGAGAGATAACAAGAAGACTCGAATT
genomic: CCGGAGCCCCCGTCTACCTCGCCGCCGTTCTCGAATATCTCGCTGCTGAGgtaattgcag ... attgttttagGTTTTGGAATTGGCTGGAAACGCTGCGAGAGATAACAAGAAGACTCGAATT
EST: gi|8284714|gb|BE022256.1|BE022256
EST:     CCGGAGCCCCCGTCTACCTCGCCGCCGTTCTCGAATATCTCGCTGCTGAG                         GTTTTGGAATTGGCTGGAAACGCTGCGAGAGATAACAAGAAGACTAGAATT
genomic: CCGGAGCCCCCGTCTACCTCGCCGCCGTTCTCGAATATCTCGCTGCTGAGgtaattgcag ... attgttttagGTTTTGGAATTGGCTGGAAACGCTGCGAGAGATAACAAGAAGACTCGAATT
EST: gi|15337493|gb|BI498149.1|BI498149
EST:     CCGGAGCCCCCGTCTACCTCGCCGCCGTTCTCGAATATCTCGCTGCTGAG                         GTTTTGGAATTGGCTGGAAACGCTGCGAGAGATAACAAGAAGACTAGAATT
genomic: CCGGAGCCCCCGTCTACCTCGCCGCCGTTCTCGAATATCTCGCTGCTGAGgtaattgcag ... attgttttagGTTTTGGAATTGGCTGGAAACGCTGCGAGAGATAACAAGAAGACTCGAATT
EST: gi|58017472|gb|CX704214.1|CX704214
EST:     CCGGAGCCCCCGTCTACCTCGCCGCCGTTCTCGAATATCTCGCTGCTGAG                         GTTTTGGAATTGGCTGGAAACGCTGCGAGAGATAACAAGAAGACTCGAATT
genomic: CCGGAGCCCCCGTCTACCTCGCCGCCGTTCTCGAATATCTCGCTGCTGAGgtaattgcag ... attgttttagGTTTTGGAATTGGCTGGAAACGCTGCGAGAGATAACAAGAAGACTCGAATT
EST: gi|7042111|gb|AW472005.1|AW472005
EST:     CCGGAGCCCCCGTCTACCTCGCCGCCGTTCTCGAATATCTCGCTGCTGAG                         GTTTTGGAATTGGCTGGAAACGCTGCGAGAGATAACAAGAAGACTCGAATT
genomic: CCGGAGCCCCCGTCTACCTCGCCGCCGTTCTCGAATATCTCGCTGCTGAGgtaattgcag ... attgttttagGTTTTGGAATTGGCTGGAAACGCTGCGAGAGATAACAAGAAGACTCGAATT
EST: gi|298176728|gb|HO026849.1|HO026849
EST:     CCGGAGCGCCCGTCTACCTCGCCGCCGTTCTCGAATATCTCGCTGCTGAG                         GTTTTGGAATTGGCTGGAAACGCTGCGAGAGATAACAAGAAGACTCGAATT
genomic: CCGGAGCCCCCGTCTACCTCGCCGCCGTTCTCGAATATCTCGCTGCTGAGgtaattgcag ... attgttttagGTTTTGGAATTGGCTGGAAACGCTGCGAGAGATAACAAGAAGACTCGAATT
EST: gi|19453004|gb|BM954414.1|BM954414
EST:     CCGGAGCCCCCGTCTACCTCGCCGCCGTTCTCGAATATCTCGCTGCTGAG                         GTTTTGGAATTGGCTGGAAACGCTGCGAGAGATAACAAGAAGACTCGAATT
genomic: CCGGAGCCCCCGTCTACCTCGCCGCCGTTCTCGAATATCTCGCTGCTGAGgtaattgcag ... attgttttagGTTTTGGAATTGGCTGGAAACGCTGCGAGAGATAACAAGAAGACTCGAATT
EST: gi|298181027|gb|HO022466.1|HO022466
EST:     CCGGAGCCCCCGTCTACCTCGCCGCCGTTCTCGAATATCTCGCTGCTGAG                         GTTTTGGAATTGGCTGGAAACGCTGCGAGAGATAACAAGAAGACTCGAATT
genomic: CCGGAGCCCCCGTCTACCTCGCCGCCGTTCTCGAATATCTCGCTGCTGAGgtaattgcag ... attgttttagGTTTTGGAATTGGCTGGAAACGCTGCGAGAGATAACAAGAAGACTCGAATT
EST: gi|298179204|gb|HO027675.1|HO027675
EST:     CCGGAGCCCCCGTCTACCCCGCCGCCGTTCTCGAATATCTCGCTGCTGAG                         GTTTTGGAATTGGCTGGAAACGCTGCGAGAGATAACAAGAAGACTCGAATT
genomic: CCGGAGCCCCCGTCTACCTCGCCGCCGTTCTCGAATATCTCGCTGCTGAGgtaattgcag ... attgttttagGTTTTGGAATTGGCTGGAAACGCTGCGAGAGATAACAAGAAGACTCGAATT
EST: gi|207687305|gb|GD667991.1|GD667991
EST:     CCGGAGCCCCCGTCTACCTCGCCGCCGTTCTCGAATATCTCGCTGCTGAG                         GTTTTGGAATTGGCTGGAAACGCTGCGAGAGATAACAAGAAGACTCGAATT
genomic: CCGGAGCCCCCGTCTACCTCGCCGCCGTTCTCGAATATCTCGCTGCTGAGgtaattgcag ... attgttttagGTTTTGGAATTGGCTGGAAACGCTGCGAGAGATAACAAGAAGACTCGAATT
EST: gi|8402037|gb|BE057671.1|BE057671
EST:     CCGGAGCCCCCGTCTACCTCGCCGCCGTTCTCGAATATCTCGCTGCTGAG                         GTTTTGGAATTGGCTGGAAACGCTGCGAGAGATAACAAGAAGACTCGAATT
genomic: CCGGAGCCCCCGTCTACCTCGCCGCCGTTCTCGAATATCTCGCTGCTGAGgtaattgcag ... attgttttagGTTTTGGAATTGGCTGGAAACGCTGCGAGAGATAACAAGAAGACTCGAATT
EST: gi|193693763|gb|FK628137.1|FK628137
EST:     CCGGAGCCCCCGTCTACCTCGCCGCCGTTCTCGAATATCTCGCTGCTGAG                         GTTTTGGAATTGGCTGGAAACGCTGCGAGAGATAACAAGAAGACTCGAATT
genomic: CCGGAGCCCCCGTCTACCTCGCCGCCGTTCTCGAATATCTCGCTGCTGAGgtaattgcag ... attgttttagGTTTTGGAATTGGCTGGAAACGCTGCGAGAGATAACAAGAAGACTCGAATT
EST: gi|213606356|gb|DB962977.1|DB962977
EST:     CCGGAGCCCCCGTCTACCTCGCCGCCGTTCTCGAATATCTCGCTGCTGAG                         GTTTTGGAATTGGCTGGAAACGCTGCGAGAGATAACAAGAAGACTCGAATT
genomic: CCGGAGCCCCCGTCTACCTCGCCGCCGTTCTCGAATATCTCGCTGCTGAGgtaattgcag ... attgttttagGTTTTGGAATTGGCTGGAAACGCTGCGAGAGATAACAAGAAGACTCGAATT
EST: gi|192333171|gb|FK026500.1|FK026500
EST:     CCGGAGCCCCCGTCTACCTCGCCGCCGTTCTCGAATATCTCGCTGCTGAG                         GTTTTGGAATTGGCTGGAAACGCTGCGAGAGATAACAAGAAGACTCGAATT
genomic: CCGGAGCCCCCGTCTACCTCGCCGCCGTTCTCGAATATCTCGCTGCTGAGgtaattgcag ... attgttttagGTTTTGGAATTGGCTGGAAACGCTGCGAGAGATAACAAGAAGACTCGAATT
EST: gi|21675356|gb|BQ627707.1|BQ627707
EST:     CCGGAGCCCCCGTCTACCTCGCCGCCGTTCTCGAATATCTCGCTGCTGAG                         GTTTTGGAATTGGCTGGAAACGCTGCGAGAGATAACAAGAAGACTCGAATT
genomic: CCGGAGCCCCCGTCTACCTCGCCGCCGTTCTCGAATATCTCGCTGCTGAGgtaattgcag ... attgttttagGTTTTGGAATTGGCTGGAAACGCTGCGAGAGATAACAAGAAGACTCGAATT
EST: gi|193306671|gb|FK269741.1|FK269741
EST:     CCGGAGCCCCCGTCTACCTCGCCGCCGTTCTCGAATATCTCGCTGCTGAG                         GTTTTGGAATTGGCTGGAAACGCTGCGAGAGATAACAAGAAGACTCGAATT
genomic: CCGGAGCCCCCGTCTACCTCGCCGCCGTTCTCGAATATCTCGCTGCTGAGgtaattgcag ... attgttttagGTTTTGGAATTGGCTGGAAACGCTGCGAGAGATAACAAGAAGACTCGAATT
EST: gi|209717583|gb|BW653970.1|BW653970
EST:     CGAATATCTCGCTGCTGAG                         GTTTTGGAATTGGCTGGAAACGCTGCGAGAGATAACAAGAAGACTCGAATT
genomic: CGAATATCTCGCTGCTGAGgtaattgcag ... attgttttagGTTTTGGAATTGGCTGGAAACGCTGCGAGAGATAACAAGAAGACTCGAATT
EST: gi|254315025|gb|GR830018.1|GR830018
EST:     CCGGAGCCCCCGTCTACCTCGCCGCCGTTCTCGAATATCTCGCTGCTGAG                         GTTTTGGAATTGGCTGGAAACGCTGCGAGAGATAACAAGAAGACTCGAATT
genomic: CCGGAGCCCCCGTCTACCTCGCCGCCGTTCTCGAATATCTCGCTGCTGAGgtaattgcag ... attgttttagGTTTTGGAATTGGCTGGAAACGCTGCGAGAGATAACAAGAAGACTCGAATT
EST: gi|13481954|gb|BG511297.1|BG511297
EST:     CCGGAGCCCCCGTCTACCTCGCCGCCGTTCTCGAATATCTCGCTGCTGAG                         GTTTTGGAATTGGCTGGAAACGCTGCGAGAGATAACAAGAAGACTCGAATT
genomic: CCGGAGCCCCCGTCTACCTCGCCGCCGTTCTCGAATATCTCGCTGCTGAGgtaattgcag ... attgttttagGTTTTGGAATTGGCTGGAAACGCTGCGAGAGATAACAAGAAGACTCGAATT
EST: gi|9903270|gb|BE612238.1|BE612238
EST:     CCGGAGCCCCCGTCTACCTCGCCGCCGTTCTCGAATATCTCGCTGCTGAG                         GTTTTGGAATTGGCTGGAAACGCTGCGAGAGATAACAAGAAGACTCGAATT
genomic: CCGGAGCCCCCGTCTACCTCGCCGCCGTTCTCGAATATCTCGCTGCTGAGgtaattgcag ... attgttttagGTTTTGGAATTGGCTGGAAACGCTGCGAGAGATAACAAGAAGACTCGAATT
EST: gi|208025297|gb|GD822827.1|GD822827
EST:     CCGGAGCCCCCGTCTACCTCGCCGCCGTTCTCGAATATCTCGCTGCTGAG                         GTTTTGGAATTGGCTGGAAACGCTGCGAGAGATAACAAGAAGACTCGAATT
genomic: CCGGAGCCCCCGTCTACCTCGCCGCCGTTCTCGAATATCTCGCTGCTGAGgtaattgcag ... attgttttagGTTTTGGAATTGGCTGGAAACGCTGCGAGAGATAACAAGAAGACTCGAATT
EST: gi|12690581|gb|BG156917.1|BG156917
EST:     CCGGAGCCCCCGTCTACCTCGCCGCCGTTCTCGAATATCTCGCTGCTGAG                         GTTTTGGAATTGGCTGGAAACGCTGCGAGAGATAACAAGAAGACTCGAATT
genomic: CCGGAGCCCCCGTCTACCTCGCCGCCGTTCTCGAATATCTCGCTGCTGAGgtaattgcag ... attgttttagGTTTTGGAATTGGCTGGAAACGCTGCGAGAGATAACAAGAAGACTCGAATT
EST: gi|209717086|gb|BW671393.1|BW671393
EST:     CCGGAGCCCCCGTCTACCTCGCCGCCGTTCTCGAATATCTCGCTGCTGAG                         GTTTTGGAATTGGCTGGAAACACTGCGAGAGATAACAAGAAGACTCGAA
genomic: CCGGAGCCCCCGTCTACCTCGCCGCCGTTCTCGAATATCTCGCTGCTGAGgtaattgcag ... attgttttagGTTTTGGAATTGGCTGGAAACGCTGCGAGAGATAACAAGAAGACTCGAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCGTATCGCCAGGTTCCTCAAGGCCGGAAAGTACGCCGAGCGCGTCGGCGCCGGAGCCCCCGTCTACCTCGCCGCCGTTCTCGAATATCTCGCTGCTGAGgtaattgcagcaatttcctgtcgattttcactttgtttttttaaattatccttccctgtaattagatctagggttttgagattcaagtatctgtttttgagtaattgaatgatcggaacattgttttag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGCT