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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGTTTCTTCTCTCTGCGAGGCTCACTCCTCTTCTTCGCAATCCTCACCCTTCTCTCCTTCACCTACCTTTCTCTCAAATACTCCACCCCAACACCCCAGgtacccctttttctctttttcctccaaccccattttgaaatttctcatttttcaccgttttctcgattacccttttgctctag

Basic information

species Glycine max
transcript GLYMA01G02630.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6482067|gb|AW201338.1|AW201338
EST:     TTCTCTCCTTCACCTACCTTTCTCTCAAATACTCCACCCCAACACCCCAG                         GTTGCCAAGCTCTCGGTCGAGAACCTCAACGATGCGCCGGTAAGCGAGAAA
genomic: TTCTCTCCTTCACCTACCTTTCTCTCAAATACTCCACCCCAACACCCCAGgtaccccttt ... tttgctctagGTTGCCAAGCTCTCGGTCGAGAACCTCAACGATGCGCCGGTAAGCGAGAAA
EST: gi|193445643|gb|FK414008.1|FK414008
EST:     TTCTCTCCTTCACCTACCTTTCTCTCAAATACTCCACCCCAACACCCCAG                         GTTGCCAA-CTCTCGGTCGAGAACCTCAACGATGCGCCGGTAAGCGAGAAA
genomic: TTCTCTCCTTCACCTACCTTTCTCTCAAATACTCCACCCCAACACCCCAGgtaccccttt ... tttgctctagGTTGCCAAGCTCTCGGTCGAGAACCTCAACGATGCGCCGGTAAGCGAGAAA
EST: gi|6915828|gb|AW397358.1|AW397358
EST:     TTCTCTCCTTCACCTACCTTTCTCTCAAATACTCCACCCCAACACCCCAG                         GTTGCCAAGCTCTCGGTCGAGAACCTCAACGATGCGCCGGTAAGCGAGAAA
genomic: TTCTCTCCTTCACCTACCTTTCTCTCAAATACTCCACCCCAACACCCCAGgtaccccttt ... tttgctctagGTTGCCAAGCTCTCGGTCGAGAACCTCAACGATGCGCCGGTAAGCGAGAAA
EST: gi|42722679|gb|CK768578.1|CK768578
EST:     TTCTCTCCTTCACCTACCTTTCTCTCAAATACTCCACCCCAACACCCCAG                         GTTGCCAAGCTCTCGGTCGAGAACCTCAACGATGCGCCGGTAAGCGAGAAA
genomic: TTCTCTCCTTCACCTACCTTTCTCTCAAATACTCCACCCCAACACCCCAGgtaccccttt ... tttgctctagGTTGCCAAGCTCTCGGTCGAGAACCTCAACGATGCGCCGGTAAGCGAGAAA
EST: gi|46492819|gb|CN472375.1|CN472375
EST:     TTCTCTCCTTCACCTACCTTTCTCTCAAATACTCCACCCCAACACCCCAG                         GTTGCCAAGCTCTCGGTCGAGAACCTCAACGATGCGCCGGTAAGCGAGAAA
genomic: TTCTCTCCTTCACCTACCTTTCTCTCAAATACTCCACCCCAACACCCCAGgtaccccttt ... tttgctctagGTTGCCAAGCTCTCGGTCGAGAACCTCAACGATGCGCCGGTAAGCGAGAAA