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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTCCGGCATCTTTCAGATCAACACCGCCGTCTCCACGTTCCAGAGACTCGTCAACACCCTCGGAACCCCCAAGGACACCCCCGAACTCCGCGATAAGCTgtgagatcatcatcataatcataatcactctctctctatacatttgcctcgattttgtggtttggattgatcggattgcgtgttgcttctgttttaagataacgattcgacgattgaatcgagtttttgttcgaaatttgcag

Basic information

species Glycine max
transcript GLYMA01G01960.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G01960.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os01g15110.1 (Oryza sativa), 5'ss of exon 1
CTTCCGGCATCTTTCAGATCAACACCGCCGTCTCCACGTTCCAGAGACTCGTCAACACCCTCGGAACCCCCAAGGACACCCCCGAACTCCGCGATAAGCTgtgagatcatcatcataatcataatcactctctctctatacatttgcctcgattttgt--ggtttggattgatcggattgcgtgttgcttctgttttaagataacgattcgacgattgaatcgagtttttgttcgaaatttgcag
| || ||  | || ||||||||||| || || || ||||||||| | || |||||||| ||||| || ||||||||||||||||| |||||||| | | ||||||     |  |     |||| || ||  ||  |   || | ||  | | ||| ||  | ||||||  |   ||   | |  | | || || ||  |  |                                           
CGTCGGGGGTGTTCCAGATCAACACGGCGGTGTCGACGTTCCAGCGGCTGGTCAACACGCTCGGCACGCCCAAGGACACCCCCGACCTCCGCGAGAGGATgtgaggctccccccgcg-ccatactctctacctaccc-cacgtctgtttggttttggtttgatttggagcggg-ggtcgggggatcgattttggttcgatttg------------------------------------------

upper sequence: GLYMA01G01960.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G017329_T01 (Zea mays), 5'ss of exon 1
CTTCCGGCATCTTTCAGATCAACACCGCCGTCTCCACGTTCCAGAGACTCGTCAACACCCTCGGAACCCCCAAGGACACCCCCGAACTCCGCGATAAGCTgtgagatcatcatcataatcataatcactctctctctatacatttgcctcgattttgtggtttggattgatcggattgcgtgttgcttctgttttaagataacgattcgacgattgaatcgagtttttgttcgaaatttgcag
| || ||| |||| |||||||||||||||||| ||||||||||| | || |||||||| ||||| || ||||||||||||||||| |||||||| | | |||| |  |     |  |  |     |   | | |  ||    ||  || | |   |||   |  ||| |       |        | ||||||||   ||  ||  |                                    
CGTCGGGCGTCTTCCAGATCAACACCGCCGTCGCCACGTTCCAGCGCCTTGTCAACACGCTCGGCACGCCCAAGGACACCCCCGACCTCCGCGACAGGATgtgcgtccgctcccccacccg----cctacccgccttaccttttgccccccagcctgt---tccgatcgccgtacctttaatccccatctgttttggtattgcggat------------------------------------

upper sequence: GLYMA01G01960.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G120115_T02 (Zea mays), 5'ss of exon 1
CTTCCGGCATCTTTCAGATCAACACCGCCGTCTCCACGTTCCAGAGACTCGTCAACACCCTCGGAACCCCCAAGGACACCCCCGAACTCCGCGATAAGCTgtgagatcatcatcataatcataatcactctctctctatacatttgcctcgattttgtggtttggattgatcggattgcgtgttgcttctgttttaagataacgattcgacgattgaatcgagtttttgttcgaaatttgcag
| || ||| |||| |||||||||||||| ||  ||||||||||| | ||||||||||| ||||| || |||||||| |||||||| |||||||| | | |||  |  |  | |      |    | ||     ||| |   || ||  | ||||    |  |||  |  | |    | ||| ||| ||  |           || | || |                                
CGTCGGGCGTCTTCCAGATCAACACCGCGGTTGCCACGTTCCAGCGCCTCGTCAACACGCTCGGCACGCCCAAGGATACCCCCGACCTCCGCGACAGGATgtacgtcccgccttcctgcc----ttacctcacctcca---atctgttttgatt----gccttgcctcaacccccatccgttttgatttcgcggactcggtccgctccggc--------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7234792|gb|AW570125.1|AW570125
EST:     GTCAACACCCTCGGAACCCCCAAGGACACCCCCGAACTCCGCGATAAGCT                         GCACAAGACGAGACTGCACATTGGACAATTGGTGAAGGATACTTCGGCTAA
genomic: GTCAACACCCTCGGAACCCCCAAGGACACCCCCGAACTCCGCGATAAGCTgtgagatcat ... aaatttgcagGCACAAGACGAGACTGCACATTGGACAATTGGTGAAGGATACTTCGGCTAA
EST: gi|7686678|gb|AW757256.1|AW757256
EST:     GTCAACACCCTCGGAACCCCCAAGGACACCCCCGAACTCCGCGATAAGCT                         GCACAAGACGAGACTGCACATTGGACAATTGGTGAAGGATACTTCGGCTAA
genomic: GTCAACACCCTCGGAACCCCCAAGGACACCCCCGAACTCCGCGATAAGCTgtgagatcat ... aaatttgcagGCACAAGACGAGACTGCACATTGGACAATTGGTGAAGGATACTTCGGCTAA
EST: gi|9564916|gb|BE474425.1|BE474425
EST:     GTCAACACCCTCGGAACCCCCAAGGACACCCCCGAACTCCGCGATAAGCT                         GCACAAGACGAGACTGCACATTGGACAATTGGTGAAGGATACTTCGGCTAA
genomic: GTCAACACCCTCGGAACCCCCAAGGACACCCCCGAACTCCGCGATAAGCTgtgagatcat ... aaatttgcagGCACAAGACGAGACTGCACATTGGACAATTGGTGAAGGATACTTCGGCTAA
EST: gi|23733229|gb|BU764801.1|BU764801
EST:     GTCAACACCCTCGGAACCCCCAAGGACACCCCCGAACTCCGCGATAAGCT                         GCACAAGACGAGACTGCACATTGGACAATTGGTGAAGGATACTTCGGCTAA
genomic: GTCAACACCCTCGGAACCCCCAAGGACACCCCCGAACTCCGCGATAAGCTgtgagatcat ... aaatttgcagGCACAAGACGAGACTGCACATTGGACAATTGGTGAAGGATACTTCGGCTAA
EST: gi|15813270|gb|BI785545.1|BI785545
EST:     GTCAACACCCTCGGAACCCCCAAGGACACCCCCGAACTCCGCGATAAGCT                         GCACAAGACGAGACTGCACATTGGACAATTGGTGAAGGATACTTCGGCTAA
genomic: GTCAACACCCTCGGAACCCCCAAGGACACCCCCGAACTCCGCGATAAGCTgtgagatcat ... aaatttgcagGCACAAGACGAGACTGCACATTGGACAATTGGTGAAGGATACTTCGGCTAA
EST: gi|192310953|gb|FK001590.1|FK001590
EST:     GTCAACACCCTCGGAACCCCCAAGGACACCCCCGAACTCCGCGATAAGCT                         GCACAAGACGAGACTGCACATTGGACAATTGGTGAAGGATACTTCGGCTAA
genomic: GTCAACACCCTCGGAACCCCCAAGGACACCCCCGAACTCCGCGATAAGCTgtgagatcat ... aaatttgcagGCACAAGACGAGACTGCACATTGGACAATTGGTGAAGGATACTTCGGCTAA
EST: gi|16348244|gb|BI973839.1|BI973839
EST:     GTCAACACCCTCGGAACCCCCAAGGACACCCCCGAACTCCGCGATAAGCT                         GCACAAGACGAGACTGCACATTGGACAATTGGTGAAGGATACTTCGGCTAA
genomic: GTCAACACCCTCGGAACCCCCAAGGACACCCCCGAACTCCGCGATAAGCTgtgagatcat ... aaatttgcagGCACAAGACGAGACTGCACATTGGACAATTGGTGAAGGATACTTCGGCTAA