1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TTGCTGACGCCATGGACGTTGAGATGCACGCGGGTCTTGCTTCTGAAGGTGGCAGCAAGCTCAAGATGTTGATCACTTATGTTGATAATCTCCCTTCTGGgttcgtaaatccatcacctttttcttagaatctgccttttctgctttagtttcactcttccataaccggttttcatgttttttatgttatacatgatgat...
species | Glycine max |
transcript | GLYMA01G01060.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GGCAGCAAGCTCAAGATGTTGATCACTTATGTTGATAATCTCCCTTCTGG GGATGAGAAAGGACTCTTTTATGCATTAGACCTTGGTGGCACAAACTTCCGEST: gi|209711629|gb|BW671340.1|BW671340
genomic: GGCAGCAAGCTCAAGATGTTGATCACTTATGTTGATAATCTCCCTTCTGGgttcgtaaat ... ttgtttatagGGATGAGAAAGGACTCTTTTATGCATTAGACCTTGGTGGCACAAACTTCCG
EST: TTGATAATCTCCCTTCCGG GGATGAGAAAGGACTCTTTTATGCATTAGACCTTGGTGGCACAAACTTCCGEST: gi|14259395|gb|BG882303.1|BG882303
genomic: TTGATAATCTCCCTTCTGGgttcgtaaat ... ttgtttatagGGATGAGAAAGGACTCTTTTATGCATTAGACCTTGGTGGCACAAACTTCCG
EST: GGCAGCAAGCTCAAGATGTTGATCACTTATGTTGATAATCTCCCTTCTGG GGATGAGAAAGGACTCTTTTATGCATTAGACCTTGGTGGCACAAACTTCCG
genomic: GGCAGCAAGCTCAAGATGTTGATCACTTATGTTGATAATCTCCCTTCTGGgttcgtaaat ... ttgtttatagGGATGAGAAAGGACTCTTTTATGCATTAGACCTTGGTGGCACAAACTTCCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTGCTGACGCCATGGACGTTGAGATGCACGCGGGTCTTGCTTCTGAAGGTGGCAGCAAGCTCAAGATGTTGATCACTTATGTTGATAATCTCCCTTCTGGgttcgtaaatccatcacctttttcttagaatctgccttttctgctttagtttcactcttccataaccggttttcatgttttttatgttatacatgatgat
- - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG