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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGATGAGAGGAATAGCAGCAGCAGCAAGCTATGGCGGAAGAACCGAAAGTTCCACCACCTTCCAATCCTACGTTGTCGTTTGATCCTAGTCGAAgtgagtatctctctttctctttctctctcatcgtcacatcttacgatttctgtttttcattgaaattttgagtttagggcttgataattctaattttcaattgttgttgaag

Basic information

species Glycine max
transcript GLYMA01G00610.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58015312|gb|CX702054.1|CX702054
EST:     GAAAGTTCCACCACCTTCCAATCCTACGTTGTCGTTTGATCCTAGTCGAA                         CGGTTGGTATTATCAAGAGGAAGGCCTTGATCAAAGACTTAGCTGCGGTAT
genomic: GAAAGTTCCACCACCTTCCAATCCTACGTTGTCGTTTGATCCTAGTCGAAgtgagtatct ... gttgttgaagCGGTTGGTATTATCAAGAGGAAGGCCTTGATCAAAGACTTAGCTGCGGTAT
EST: gi|22522949|gb|BU081760.1|BU081760
EST:     GAAAGTTCCACCACCTTCCAATCCTACGTTGTCGTTTGATCCTAGTCGAA                         CGGTTGGTATTATCAAGAGGAAGGCCTTGATCAAAGACTTAGCTGCGGTAT
genomic: GAAAGTTCCACCACCTTCCAATCCTACGTTGTCGTTTGATCCTAGTCGAAgtgagtatct ... gttgttgaagCGGTTGGTATTATCAAGAGGAAGGCCTTGATCAAAGACTTAGCTGCGGTAT
EST: gi|192301739|gb|FG994419.1|FG994419
EST:     GAAAGTTCCACCACCTTCCAATCCTACGTTGTCGTTTGATCCTAGTCGAA                         CGGTTGGTATTATCAAGAGGAAGGCCTTGATCAAAGACTTAGCTGCGGTAT
genomic: GAAAGTTCCACCACCTTCCAATCCTACGTTGTCGTTTGATCCTAGTCGAAgtgagtatct ... gttgttgaagCGGTTGGTATTATCAAGAGGAAGGCCTTGATCAAAGACTTAGCTGCGGTAT
EST: gi|18039897|gb|BM308191.1|BM308191
EST:     GAAAGTTCCACCACCTTCCAATCCTACGTTGTCGTTTGATCCTAGTCGAA                         CGGTTGGTATTATCAAGAGGAAGGCCTTGATCAAAGACTTAGCTGCGGTAT
genomic: GAAAGTTCCACCACCTTCCAATCCTACGTTGTCGTTTGATCCTAGTCGAAgtgagtatct ... gttgttgaagCGGTTGGTATTATCAAGAGGAAGGCCTTGATCAAAGACTTAGCTGCGGTAT
EST: gi|51335196|gb|CO979062.1|CO979062
EST:     GAAAGTTCCACCACCTTCCAATCCTACGTTGTCGTTTGATCCTAGTCGAA                         CGGTTGGTATTATCAAGAGGAAGGCCTTGATCAAAGACTTAGCTGCGGTAT
genomic: GAAAGTTCCACCACCTTCCAATCCTACGTTGTCGTTTGATCCTAGTCGAAgtgagtatct ... gttgttgaagCGGTTGGTATTATCAAGAGGAAGGCCTTGATCAAAGACTTAGCTGCGGTAT
EST: gi|298184469|gb|HO029682.1|HO029682
EST:     GAAAGTTCCACCACCTTCCAATCCTACGTTGTCGTTTGATCCTAGTCGAA                         CGGTTGGTATTATCAAGAGGAAGGCCTTGATCAAAGACTTAGCTGCGGTAT
genomic: GAAAGTTCCACCACCTTCCAATCCTACGTTGTCGTTTGATCCTAGTCGAAgtgagtatct ... gttgttgaagCGGTTGGTATTATCAAGAGGAAGGCCTTGATCAAAGACTTAGCTGCGGTAT
EST: gi|298163500|gb|HO012233.1|HO012233
EST:     GAAAGTTCCACCACCTTCCAATCCTACGTTGTCGTTTGATCCTAGTCGAA                         CGGTTGGTATTATCAAGAGGAAGGCCTTGATCAAAGACTTAGCTGCGGTAT
genomic: GAAAGTTCCACCACCTTCCAATCCTACGTTGTCGTTTGATCCTAGTCGAAgtgagtatct ... gttgttgaagCGGTTGGTATTATCAAGAGGAAGGCCTTGATCAAAGACTTAGCTGCGGTAT
EST: gi|298191599|gb|HO039078.1|HO039078
EST:     GAAAGTTCCACCACCTTCCAATCCTACGTTGTCGTTTGATCCTAGTCGAATTGAA                     
genomic: GAAAGTTCCACCACCTTCCAATCCTACGTTGTCGTTTGATCCTAGTC-----GAAgtgagtatct ... gttgtt
EST: gi|298191599|gb|HO039078.1|HO039078
EST:     GAAAGTTCCACCACCTTCCAATCCTACGTTGTCGTTTGATCCTAGTCGAATTGAA                     
genomic: GAAAGTTCCACCACCTTCCAATCCTACGTTGTCGTTTGATCCTAGTC-----GAAgtgagtatct ... gttgtt
EST: gi|23733319|gb|BU764851.1|BU764851
EST:     GAAAGTTCCACCACCTTCCAATCCTACGTTGTCGTTTGATCCTAGTCGAA                         CGGTTGGTATTATCAAGAGGAAGGCCTTGATCAAAGACTTAGCTGCGGTAT
genomic: GAAAGTTCCACCACCTTCCAATCCTACGTTGTCGTTTGATCCTAGTCGAAgtgagtatct ... gttgttgaagCGGTTGGTATTATCAAGAGGAAGGCCTTGATCAAAGACTTAGCTGCGGTAT
EST: gi|207786491|gb|GD757554.1|GD757554
EST:     GAAAGTTCCACCACCTTCCAATCCTACGTTGTCGTTTGATCCTAGTCGAA                         CGGTTGGTATTATCAAGAGGAAGGCCTTGATCAAAGACTTAGCTGCGGTAT
genomic: GAAAGTTCCACCACCTTCCAATCCTACGTTGTCGTTTGATCCTAGTCGAAgtgagtatct ... gttgttgaagCGGTTGGTATTATCAAGAGGAAGGCCTTGATCAAAGACTTAGCTGCGGTAT
EST: gi|298186156|gb|HO036789.1|HO036789
EST:     GAAAGTTCCACCACCTTCCAATCCTACGTTGTCGTTTGATCCTAGTCGAA                         CGGTTGGTATTATCAAGAGGAAGGCCTTGATCAAAGACTTAGCTGCGGTAT
genomic: GAAAGTTCCACCACCTTCCAATCCTACGTTGTCGTTTGATCCTAGTCGAAgtgagtatct ... gttgttgaagCGGTTGGTATTATCAAGAGGAAGGCCTTGATCAAAGACTTAGCTGCGGTAT
EST: gi|298179740|gb|HO024955.1|HO024955
EST:     GAAAGTTCCACCACCTTCCAATCCTACGTTGTCGTTTGATCCTAGTCGAA                         CGGTTGGTATTATCAAGAGGAAGGCCTTGATCAAAGACTTAGCTGCGGTAT
genomic: GAAAGTTCCACCACCTTCCAATCCTACGTTGTCGTTTGATCCTAGTCGAAgtgagtatct ... gttgttgaagCGGTTGGTATTATCAAGAGGAAGGCCTTGATCAAAGACTTAGCTGCGGTAT
EST: gi|192301738|gb|FG994418.1|FG994418
EST:     GAAAGTTCCACCACCTTCCAATCCTACGTTGTCGTTTGATCCTAGTCGAA                         CGGTTGGTATTATCAAGAGGAAGGCCTTGATCAAAGACTTAGCTGCGGTAT
genomic: GAAAGTTCCACCACCTTCCAATCCTACGTTGTCGTTTGATCCTAGTCGAAgtgagtatct ... gttgttgaagCGGTTGGTATTATCAAGAGGAAGGCCTTGATCAAAGACTTAGCTGCGGTAT