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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGTGCGAGGGCACCACTGGCCACGCGGAGGTCGTGCAGgtgaggcgtgctgagcggtcgggtcgacttgcgttgtgtgcttgtgtgcttgtgtgtatgtgtgataggtgcgcccatatcatatgctcaaagacagtgc...

Basic information

species Chlamydomonas reinhardtii
transcript EDP09617
intron # 9
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|23362291|gb|BU650111.1|BU650111
EST:     GTGTGCGAGGGCACCACTGGCCACGCGGAGGTCGTGCAG                         GTCCTGTACGACCCCGCTGACGTGTCGTACGACCGCCTGCTTGAGGAGTTC
genomic: GTGTGCGAGGGCACCACTGGCCACGCGGAGGTCGTGCAGgtgaggcgtg ... acacacacagGTCCTGTACGACCCCGCTGACGTGTCGTACGACCGCCTGCTTGAGGAGTTC
EST: gi|161813771|gb|FC104475.1|FC104475
EST:     GTGTGCGAGGGCACCACTGGCCACGCGGAGGTCGTGCAG                         GTCCTGTACGACCCCGCTGACGTGTCGTACGACCGCCTGCTGGAGGAGTTC
genomic: GTGTGCGAGGGCACCACTGGCCACGCGGAGGTCGTGCAGgtgaggcgtg ... acacacacagGTCCTGTACGACCCCGCTGACGTGTCGTACGACCGCCTGCTTGAGGAGTTC
EST: gi|161791746|gb|FC078641.1|FC078641
EST:     GTGTGCGAGGGCACCACTGGCCACGCGGAGGTCGTGCAG                         GTCCTGTACGACCCCGCTGACGTGTCGTACGACCGCCTGCTGGAGGAGTTC
genomic: GTGTGCGAGGGCACCACTGGCCACGCGGAGGTCGTGCAGgtgaggcgtg ... acacacacagGTCCTGTACGACCCCGCTGACGTGTCGTACGACCGCCTGCTTGAGGAGTTC
EST: gi|161818190|gb|FC101896.1|FC101896
EST:     GTGTGCGAGGGCACCACTGGCCACGCGGAGGTCGTGCAG                         GTCCTGTACGACCCCGCTGACGTGTCGTACGACCGCCTGCTGGAGGAGTTC
genomic: GTGTGCGAGGGCACCACTGGCCACGCGGAGGTCGTGCAGgtgaggcgtg ... acacacacagGTCCTGTACGACCCCGCTGACGTGTCGTACGACCGCCTGCTTGAGGAGTTC
EST: gi|161792760|gb|FC080701.1|FC080701
EST:     GTGTGCGAGGGCACCACTGGCCACGCGGAGGTCGTGCAG                         GTCCTGTACGACCCCGCTGACGTGTCGTACGACCGCCTGCTGGAGGAGTTC
genomic: GTGTGCGAGGGCACCACTGGCCACGCGGAGGTCGTGCAGgtgaggcgtg ... acacacacagGTCCTGTACGACCCCGCTGACGTGTCGTACGACCGCCTGCTTGAGGAGTTC
EST: gi|16432720|gb|BI997946.1|BI997946
EST:     GTGTGCGAGGGCACCACTGGCCACGCGGAGGTCGTGCAG                         GTCCTGTACGACCNCGCTGACGTGTCGT
genomic: GTGTGCGAGGGCACCACTGGCCACGCGGAGGTCGTGCAGgtgaggcgtg ... acacacacagGTCCTGTACGACCCCGCTGACGTGTCGT
EST: gi|14232374|gb|BG851190.1|BG851190
EST:     GTGTGCGAGGGCACCACTGGCCACGCTGAGGTCGGGCAG                         GTCCTGTACGACCCCGCTGAC
genomic: GTGTGCGAGGGCACCACTGGCCACGCGGAGGTCGTGCAGgtgaggcgtg ... acacacacagGTCCTGTACGACCCCGCTGAC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTGTGCGAGGGCACCACTGGCCACGCGGAGGTCGTGCAGgtgaggcgtgctgagcggtcgggtcgacttgcgttgtgtgcttgtgtgcttgtgtgtatgtgtgataggtgcgcccatatcatatgctcaaagacagtgc

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