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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCCACCGCCTTCGTCAAGGTGCTGGGCAACAAGAAGGCCGCGCGCCAGGTGTACAACATCAGCGGCGAGCGCTTCGTGACCTTTGACGGCATTGCCAAGgtgggggcgttgctgggtcggtgggtgggggtatcaggcattggcagccgggcactttgtacggcggttgggtaccggttgcgtcggtgggcgggcggggatccctcggcagggatgtgcgtgtctccggctatctggcgctgcgccaacgtcatcgtcaacgacacccacccccacccccacctccacgcccacgcag

Basic information

species Chlamydomonas reinhardtii
transcript EDP05666
intron # 9
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10776358|gb|AV633038.1|AV633038
EST:     TGTACAACATCAGCGGCGAGCGCTTCGTGACCTTTGACGGCATTGCCAAG                         GCTTGCGCCAAGGCAATGGGTGTTCCCGAGCCCGAGCTAATCCACTACAAC
genomic: TGTACAACATCAGCGGCGAGCGCTTCGTGACCTTTGACGGCATTGCCAAGgtgggggcgt ... gcccacgcagGCTTGCGCCAAGGCAATGGGTGTTCCCGAGCCCGAGCTAATCCACTACAAC
EST: gi|49463595|gb|BP091508.1|BP091508
EST:     GTACAACATCAGCGGCGAGCTGCTTCGTGACCTTTGACGGCATTGCCAAG                         GCTTGCGCCAAGGCAATGGGTGTTCCCGAGCCCGAGCTAATCCACTACAAC
genomic: GTACAACATCAGCGGCGAGC-GCTTCGTGACCTTTGACGGCATTGCCAAGgtgggggcgt ... gcccacgcagGCTTGCGCCAAGGCAATGGGTGTTCCCGAGCCCGAGCTAATCCACTACAAC
EST: gi|23362880|gb|BU650700.1|BU650700
EST:     TGTACAACATCAGCGGCGAGCGCTTCGTGACCTTTGACGGCATTGCCAAG                         GCTTGCGCCAAGGCAATGGGTGTTCCCGAGCCCGAGCTAATCCACTACAAC
genomic: TGTACAACATCAGCGGCGAGCGCTTCGTGACCTTTGACGGCATTGCCAAGgtgggggcgt ... gcccacgcagGCTTGCGCCAAGGCAATGGGTGTTCCCGAGCCCGAGCTAATCCACTACAAC
EST: gi|10775426|gb|AV632106.1|AV632106
EST:     TGTACAACATCAGCGGCGAGCGCTTCGTGACCTTTGACGGCATTGCCAAG                         GCTTGCGCCAAGGCAATGGGTGTTCCCGAGCCCGAGCTAATCCACTACAAC
genomic: TGTACAACATCAGCGGCGAGCGCTTCGTGACCTTTGACGGCATTGCCAAGgtgggggcgt ... gcccacgcagGCTTGCGCCAAGGCAATGGGTGTTCCCGAGCCCGAGCTAATCCACTACAAC
EST: gi|10781414|gb|AV638094.1|AV638094
EST:     TGTACAACATCAGCGGCGAGCGCTTCGTGAACTTTGACGGCATTGCCAAG                         GCTTGCGCCAAGGCAATGGGTGTTCCCGAGCCCGAGCTAATCCAC
genomic: TGTACAACATCAGCGGCGAGCGCTTCGTGACCTTTGACGGCATTGCCAAGgtgggggcgt ... gcccacgcagGCTTGCGCCAAGGCAATGGGTGTTCCCGAGCCCGAGCTAATCCAC
EST: gi|49461557|gb|BP089470.1|BP089470
EST:     TGTACAACATCAGCGGCGAGCGCTTCGTGACCTTTGACGGCATTGCCAAG                         GCTTGCGCCAAGGCAATGGGTGTTCCCGAGCCCGAGCTAATCCACTACAAC
genomic: TGTACAACATCAGCGGCGAGCGCTTCGTGACCTTTGACGGCATTGCCAAGgtgggggcgt ... gcccacgcagGCTTGCGCCAAGGCAATGGGTGTTCCCGAGCCCGAGCTAATCCACTACAAC
EST: gi|49464046|gb|BP091959.1|BP091959
EST:     TGTACAACATCAGCGGCGAGCGCTTCGTGACCTTTGACGGCATTGCCAAG                         GCTTGCGCCAAGGCAATGGGTGTTCCCGAGCCCGAGCTAATCCACTACAAC
genomic: TGTACAACATCAGCGGCGAGCGCTTCGTGACCTTTGACGGCATTGCCAAGgtgggggcgt ... gcccacgcagGCTTGCGCCAAGGCAATGGGTGTTCCCGAGCCCGAGCTAATCCACTACAAC
EST: gi|34990505|gb|CF564422.1|CF564422
EST:     TGTACAACATCAGCGGCGAGCGCTTCGTGACCTTTGACGGCATTGCCAAC                         GCTTGCGCCAAGGCAATGGGTGTTCCCGAGCCC
genomic: TGTACAACATCAGCGGCGAGCGCTTCGTGACCTTTGACGGCATTGCCAAGgtgggggcgt ... gcccacgcagGCTTGCGCCAAGGCAATGGGTGTTCCCGAGCCC
EST: gi|10780788|gb|AV637468.1|AV637468
EST:     TGTACAACATCAGCGGCGAGCGCTTCGTGACCTTTGACGGCATTGCCAAG                         GCTTGCGCCAAGGCAATGGGTGTTCCCGAGCCCGAGCTAATCCACTACAAC
genomic: TGTACAACATCAGCGGCGAGCGCTTCGTGACCTTTGACGGCATTGCCAAGgtgggggcgt ... gcccacgcagGCTTGCGCCAAGGCAATGGGTGTTCCCGAGCCCGAGCTAATCCACTACAAC
EST: gi|49458451|gb|BP086364.1|BP086364
EST:     TGTACAACATCAGCGGCGAGCGCTTCGTGACCTTTGACGGCATTGCCAAG                         GCTTGCGCCAAGGCAATGGGTGTTCCCGAGCCCGAGCTAATCCACTACAAC
genomic: TGTACAACATCAGCGGCGAGCGCTTCGTGACCTTTGACGGCATTGCCAAGgtgggggcgt ... gcccacgcagGCTTGCGCCAAGGCAATGGGTGTTCCCGAGCCCGAGCTAATCCACTACAAC