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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCCATGCAGCCGGTGGGCCGCATGGTGCTCAACCGCAACGTGGACAACTTCTTCAACGAGAATGAGCAGGTGGCCTTCTGCCCCGCCATCATCGTGCCGGgtgagtgagaggtaggccaggcaaaccagcacagtgtggacggatcgcagggtgtgtatgtgcgtttgcatgtaccgtatcatcgtcggttatttgttcactacattcaacatgccatgttagccccgtatttcatgagacggctacccccttacccccatccccgctgtcag

Basic information

species Chlamydomonas reinhardtii
transcript EDP00871
intron # 9
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22076143|gb|BQ824919.1|BQ824919
EST:     CTTCAACGAGAATGAGCAGGTGGCCTTCTGCCCCGCCATCATCGTGCCGG                         GCATCGGCTACAGCGATGACAAGCTGCTGCAGACGCGCATCTTCTCCTACG
genomic: CTTCAACGAGAATGAGCAGGTGGCCTTCTGCCCCGCCATCATCGTGCCGGgtgagtgaga ... ccgctgtcagGCATCGGCTACAGCGATGACAAGCTGCTGCAGACGCGCATCTTCTCCTACG
EST: gi|15369143|gb|BI528569.1|BI528569
EST:     CTTCAACGAGAATGAGCAGGTGGCCTTCTGCCCCGCCATCATCGTGCCGG                         GCATCGGCTACAGCGATGACAAGCTGCTGCAGACGCGCATCTTCTCCTACG
genomic: CTTCAACGAGAATGAGCAGGTGGCCTTCTGCCCCGCCATCATCGTGCCGGgtgagtgaga ... ccgctgtcagGCATCGGCTACAGCGATGACAAGCTGCTGCAGACGCGCATCTTCTCCTACG
EST: gi|49463307|gb|BP091220.1|BP091220
EST:     CTTCAACGAGAATGAGCAGGTGGCCTTCTGCCCCGCCATCATCGTGCCGG                         GCATCGGCTACAGCGATGACAAGCTGCTGCAGACGCGCATCTTCTCCTACG
genomic: CTTCAACGAGAATGAGCAGGTGGCCTTCTGCCCCGCCATCATCGTGCCGGgtgagtgaga ... ccgctgtcagGCATCGGCTACAGCGATGACAAGCTGCTGCAGACGCGCATCTTCTCCTACG
EST: gi|22076228|gb|BQ825004.1|BQ825004
EST:     CTTCAACGAGAATGAGCAGGTGGCCTTCTGCCCCGCCATCATCGTGCCGG                         GCATCGGCTACAGCGATGACAAGCTGCTGCAGACGCGCATCTTCTCCTACG
genomic: CTTCAACGAGAATGAGCAGGTGGCCTTCTGCCCCGCCATCATCGTGCCGGgtgagtgaga ... ccgctgtcagGCATCGGCTACAGCGATGACAAGCTGCTGCAGACGCGCATCTTCTCCTACG
EST: gi|6546842|gb|AV392626.1|AV392626
EST:     CTTCAACGAGAATGAGCAGGTGGCCTTCTGCCCCGCCATCATCGTGCCGG                         GCATCGGCTACAGCGATGACAAGCTGCTGCAGACGCGCATCTTCTCCTACG
genomic: CTTCAACGAGAATGAGCAGGTGGCCTTCTGCCCCGCCATCATCGTGCCGGgtgagtgaga ... ccgctgtcagGCATCGGCTACAGCGATGACAAGCTGCTGCAGACGCGCATCTTCTCCTACG
EST: gi|10780975|gb|AV637655.1|AV637655
EST:     CTTCAACGAGAATGAGCAGGTGGCCTTCTGCCCCGCCATCATCGTGCCGG                         GCATCGGCTACAGCGATGACAAGCTGCTGCAGACGCGCATCTTCTCCTACG
genomic: CTTCAACGAGAATGAGCAGGTGGCCTTCTGCCCCGCCATCATCGTGCCGGgtgagtgaga ... ccgctgtcagGCATCGGCTACAGCGATGACAAGCTGCTGCAGACGCGCATCTTCTCCTACG
EST: gi|161817937|gb|FC103632.1|FC103632
EST:     CTTCAACGAGAACGAGCAGGTCGCCTTCTGCCCCGCCATCATCGTGCCGG                         GCATCGGCTACAGCGATGACAAGCTGCTGCAGACGCGCATCTTCTCCTACG
genomic: CTTCAACGAGAATGAGCAGGTGGCCTTCTGCCCCGCCATCATCGTGCCGGgtgagtgaga ... ccgctgtcagGCATCGGCTACAGCGATGACAAGCTGCTGCAGACGCGCATCTTCTCCTACG
EST: gi|10127159|gb|BE725863.1|BE725863
EST:     CTTCAACGAGAATGAGCAGGTGGCCTTCTGCCCCGCCATCATCGTGCCGG                         GCATCGGCTACAGCGATGACAAGCTGCTGCAGACGCGCATCTTCTCCTACG
genomic: CTTCAACGAGAATGAGCAGGTGGCCTTCTGCCCCGCCATCATCGTGCCGGgtgagtgaga ... ccgctgtcagGCATCGGCTACAGCGATGACAAGCTGCTGCAGACGCGCATCTTCTCCTACG
EST: gi|14230365|gb|BG849181.1|BG849181
EST:     CTTCAACGAGAATGAGCAGGTGGCCTTCTGCCCCGCCATCATCGTGCCGG                         GCATCGGCTACAGCGATGACAAGCTGCTGCAGACGCGCATCTTCTCCTACG
genomic: CTTCAACGAGAATGAGCAGGTGGCCTTCTGCCCCGCCATCATCGTGCCGGgtgagtgaga ... ccgctgtcagGCATCGGCTACAGCGATGACAAGCTGCTGCAGACGCGCATCTTCTCCTACG
EST: gi|15373362|gb|BI532788.1|BI532788
EST:     CTTCAACGAGAATGAGCAGGTGGCCTTCTGCCCCGCCATCATCGTGCCGG                         GCATCGGCTACAGCGATGACAAGCTGCTGCAGACGCGCATCTTCTCCTACG
genomic: CTTCAACGAGAATGAGCAGGTGGCCTTCTGCCCCGCCATCATCGTGCCGGgtgagtgaga ... ccgctgtcagGCATCGGCTACAGCGATGACAAGCTGCTGCAGACGCGCATCTTCTCCTACG
EST: gi|6542126|gb|AV387910.1|AV387910
EST:     CTTCAACGAGAATGAGCAGGTGGCCTTCTGCCCCGCCATCATCGTGCCGG                         GCATCGGCTACAGCGATGACAGGCTGCTGCAGACGCGCATCTTCTC-TACG
genomic: CTTCAACGAGAATGAGCAGGTGGCCTTCTGCCCCGCCATCATCGTGCCGGgtgagtgaga ... ccgctgtcagGCATCGGCTACAGCGATGACAAGCTGCTGCAGACGCGCATCTTCTCCTACG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CCCATGCAGCCGGTGGGCCGCATGGTGCTCAACCGCAACGTGGACAACTTCTTCAACGAGAATGAGCAGGTGGCCTTCTGCCCCGCCATCATCGTGCCGGgtgagtgagaggtaggccaggcaaaccagcacagtgtggacggatcgcagggtgtgtatgtgcgtttgcatgtaccgtatcatcgtcggttatttgttcactacattcaacatgccatgttagccccgtatttcatgagacggctacccccttacccccatccccgctgtcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGCAG