1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
AAGTACGTGACCCAGTACGCCAAGGATGAGGAGGCGTTCTTCAAGgtgcgtgcgtgggttgtgtggggcggccgcgatggctgtgttgagggcctagcggtgagggaatagcggcggtggtgtggggcaggcggaagcggcactt...
species | Chlamydomonas reinhardtii |
transcript | EDP00040 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: GTACGTGACCCAGTACGCCAAGGATGAGGAGGCGTTCTTCAAG GACTTTGCGGTGGCGTTCTCTAAGCTGCTGGAGCTGGGCGTGCCCTTCCCCEST: gi|15693707|gb|BI718012.1|BI718012
genomic: GTACGTGACCCAGTACGCCAAGGATGAGGAGGCGTTCTTCAAGgtgcgtgcgt ... acacgcgcagGACTTTGCGGTGGCGTTCTCTAAGCTGCTGGAGCTGGGCGTGCCCTTCCCC
EST: AAGTACGTGACCCAGTACGCCAAGGATGAGGAGGCGTTCTTCAAG GACTTTGCGGTGGCGTTCTCTAAGCTGCTGGAGCTGGGCGTGCCCTTCCCCEST: gi|16071895|gb|BI873891.1|BI873891
genomic: AAGTACGTGACCCAGTACGCCAAGGATGAGGAGGCGTTCTTCAAGgtgcgtgcgt ... acacgcgcagGACTTTGCGGTGGCGTTCTCTAAGCTGCTGGAGCTGGGCGTGCCCTTCCCC
EST: TACGTGACCCAGTACGCCAAGGATGAGGAGGCGTTCTTCAAG GACTTTGCGGTGGCGTTCTCTAAGCTGCTGGAGCTGGGCGTGCCCTTNNNNEST: gi|16429871|gb|BI995097.1|BI995097
genomic: TACGTGACCCAGTACGCCAAGGATGAGGAGGCGTTCTTCAAGgtgcgtgcgt ... acacgcgcagGACTTTGCGGTGGCGTTCTCTAAGCTGCTGGAGCTGGGCGTGCCCTTCCCC
EST: AAGTACGTGACCCAGTACGCCAAGGATGAGGAGGCGTTCTTCAAG GACTTTGCGGTGGCGTTCTCTAAGCTGCTGGAGCTGGGCGTGCCCTTCCCC
genomic: AAGTACGTGACCCAGTACGCCAAGGATGAGGAGGCGTTCTTCAAGgtgcgtgcgt ... acacgcgcagGACTTTGCGGTGGCGTTCTCTAAGCTGCTGGAGCTGGGCGTGCCCTTCCCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAGTACGTGACCCAGTACGCCAAGGATGAGGAGGCGTTCTTCAAGgtgcgtgcgtgggttgtgtggggcggccgcgatggctgtgttgagggcctagcggtgagggaatagcggcggtggtgtggggcaggcggaagcggcactt
- - - - - - - - - - - AGGATG
- - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcgtgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gttgtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtgttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtggtgt